View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_7 (Length: 477)
Name: NF20084_low_7
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 7646507 - 7646166
Alignment:
| Q |
18 |
agaaaaaggaaactactgaacatgggtgagctcaaatcacgtaatttataatcttcatgtgattgatttatcagtttactatcctattagggaatgg-tt |
116 |
Q |
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| T |
7646507 |
agaaaaaggaaactactgaacatgggtgagctcaaatcacgtaatttataatcttcatgtgattgatttatcagtttactatcctattagggaatggttt |
7646408 |
T |
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| Q |
117 |
tatcgtgtttgtttttaacttcttcaatttctcttatt----nnnnnnnnnnnnnncaaatttgctatcatgatttacaacatgcactaactatttgtgc |
212 |
Q |
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| T |
7646407 |
tatcgtgtttgtttttaacttcttcaatttctcttattaaaaaaaaaaaaaaaaaacaaattcgctatcatgatttacaacatgcactaactatttgtgc |
7646308 |
T |
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| Q |
213 |
taggcatcaacgataaataaattaattgatgtgttatttttaatccaaggagccaatttagattcatatgatca-nnnnnnnncattactaagacaaata |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
7646307 |
taggcatcaacgataaataaattaattgatgtgttatttttaatcgaaggagccaatttagattcatatgttcatttttttttcattactaagacaaata |
7646208 |
T |
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| Q |
312 |
aattaacaatgaaaacttagaggac-aaacaaaattaaatat |
352 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
7646207 |
aattaacaatgaaaacttagaggacaaaaaaaaattaaatat |
7646166 |
T |
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