View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_low_9 (Length: 441)

Name: NF20084_low_9
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_low_9
NF20084_low_9
[»] chr1 (10 HSPs)
chr1 (33-441)||(10999962-11000373)
chr1 (13-441)||(11002939-11003370)
chr1 (376-441)||(11034918-11034983)
chr1 (376-439)||(11009505-11009568)
chr1 (376-438)||(10975550-10975612)
chr1 (370-441)||(10988373-10988444)
chr1 (370-441)||(11019541-11019612)
chr1 (376-441)||(10905496-10905561)
chr1 (315-429)||(10921999-10922110)
chr1 (168-245)||(10921855-10921935)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 33 - 441
Target Start/End: Complemental strand, 11000373 - 10999962
Alignment:
Q  33 tgttgttgccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaa 132  Q
    |||||||||||||||| | ||||  |||||||||||||||||||||||||||||||||  ||||||| ||| | ||||||||||||||| ||||||||||    
T  11000373 tgttgttgccaccatgttcaaaaggccaagatgtaagaaacatcaactctatacgacatccatctcctagaccaaattccaaaagagatctgtccccaaa 11000274  T
Q  133 cacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11000273 cacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacat 11000174  T
Q  233 gtcacatataacatagagttgaacaa---tatattgcaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattataca 329  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11000173 gtcacatataacatagagttgaacaaatctatattgtaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattataca 11000074  T
Q  330 agcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacata 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11000073 agcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacata 10999974  T
Q  430 gtattttccaaa 441  Q
    ||||||||||||    
T  10999973 gtattttccaaa 10999962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 11003370 - 11002939
Alignment:
Q  13 aatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattcc 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11003370 aatatccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattcc 11003271  T
Q  113 aaaagagatttgtccccaaacacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11003270 aaaagagatttgtccccaaacacaatatagttccctttctgctgttcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaat 11003171  T
Q  213 attggacatgtttaggacatgtcacatataacatagagttgaacaa---tatattgcaatcatcaaacactgtatatggcaagactcttggattgatggt 309  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||   ||||| |  |||  |||||||| ||||||||||| || |||||||||||||    
T  11003170 attggacatgtttgggacatgtcacatataacatagacttgaacaaatctatatagtgatccccaaacactctatatggcaaggctattggattgatggt 11003071  T
Q  310 cgttgaagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttg 409  Q
    | |||||  |||| |||| |||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||||  ||||| || ||||| |||    
T  11003070 ccttgaatcgaaactatagaagcctagtggatgaggtgggagggaataattagagtaaccatgactattgaaatccaatagacgtatagtgaagttattg 11002971  T
Q  410 taattaatcgattgtacatagtattttccaaa 441  Q
    |||||||| |||||||||||||||||||||||    
T  11002970 taattaattgattgtacatagtattttccaaa 11002939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 11034918 - 11034983
Alignment:
Q  376 attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa 441  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  11034918 attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccaaa 11034983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 11009505 - 11009568
Alignment:
Q  376 attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttcca 439  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  11009505 attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttcca 11009568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 10975550 - 10975612
Alignment:
Q  376 attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttcc 438  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  10975550 attgaaatccaatagccgtatggtaaagttgttgtaattaattgattgtacataatattttcc 10975612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 10988373 - 10988444
Alignment:
Q  370 aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa 441  Q
    |||| ||||||||| | ||| | | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10988373 aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaa 10988444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 11019541 - 11019612
Alignment:
Q  370 aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa 441  Q
    |||| ||||||||| | ||| | | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  11019541 aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaa 11019612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 10905496 - 10905561
Alignment:
Q  376 attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa 441  Q
    ||||||||||||||  |||||||| || |||||||||||||| ||||||||||| |||||||||||    
T  10905496 attgaaatccaatagccgtatggtgaaattgttgtaattaattgattgtacataatattttccaaa 10905561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 429
Target Start/End: Original strand, 10921999 - 10922110
Alignment:
Q  315 aagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaatt 414  Q
    ||||||||||||| | |||||||| ||| ||  |||||| | ||||||||| ||||| |||   || |||||||| |||||| ||  |||||||||||||    
T  10921999 aagtgaaattatagaggcctagtgaatggggagggagggtaaaattagagtaaccaaaatt---gacatccaatagtcgtatagtgtagttgttgtaatt 10922095  T
Q  415 aatcgattgtacata 429  Q
    ||| |||||||||||    
T  10922096 aattgattgtacata 10922110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 10921855 - 10921935
Alignment:
Q  168 tactaatgttcatacaagc---agcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataaca 245  Q
    |||||||||||||||| ||   || | ||||||||||||| ||||||||||||||||| || |||||| ||| ||||||||    
T  10921855 tactaatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataaca 10921935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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