View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20085_high_10 (Length: 315)
Name: NF20085_high_10
Description: NF20085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20085_high_10 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 3767159 - 3767463
Alignment:
| Q |
11 |
caaaggcagtgttagagtttaatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttag |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767159 |
caaaggcagtgttggagtttaatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttag |
3767258 |
T |
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| Q |
111 |
cttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767259 |
cttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttg |
3767358 |
T |
|
| Q |
211 |
caagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatgctaactgtggagacagta |
310 |
Q |
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| T |
3767359 |
caagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatgctaactgtggagacagta |
3767458 |
T |
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| Q |
311 |
aagta |
315 |
Q |
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||||| |
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| T |
3767459 |
aagta |
3767463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 3781164 - 3781398
Alignment:
| Q |
32 |
atgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcc |
131 |
Q |
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| T |
3781164 |
atgatggtggaataattgcaaccgaagttggattttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcc |
3781263 |
T |
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| Q |
132 |
taacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaag |
231 |
Q |
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| T |
3781264 |
taacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaag |
3781363 |
T |
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| Q |
232 |
aacaaagtgatgaggaaatgtttggaaggcattatggt |
269 |
Q |
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| T |
3781364 |
aacaaag---tgaggaaatgttgggaaggcattgtggt |
3781398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 3776874 - 3777082
Alignment:
| Q |
55 |
gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac |
154 |
Q |
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| T |
3776874 |
gaagttggattttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac |
3776973 |
T |
|
| Q |
155 |
gaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgttt |
254 |
Q |
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| T |
3776974 |
gaacaaaatcaaaggtatcttctttttctaat---gttgaagaagtgagtgtgttacaagagataagaaggaagaagaacaaag---tgaggaaatgttt |
3777067 |
T |
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| Q |
255 |
ggaaggcattatggt |
269 |
Q |
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||||| |||| |||| |
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| T |
3777068 |
ggaagacattgtggt |
3777082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 3762802 - 3763000
Alignment:
| Q |
58 |
gtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaa |
157 |
Q |
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| T |
3762802 |
gtagggttatttccacttagtatgtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaa |
3762901 |
T |
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| Q |
158 |
caaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttgga |
257 |
Q |
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||||||||| || |||| ||||||||||| | | | | ||| ||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
3762902 |
caaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaag---tgaggaaatgtttgga |
3762998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 3751823 - 3752006
Alignment:
| Q |
64 |
ttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaat |
163 |
Q |
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||||| ||||||| || ||||||||||| ||| ||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
3751823 |
tttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaat |
3751922 |
T |
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| Q |
164 |
caactgtgtcttgtttttctgatgaa------gttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtga |
241 |
Q |
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| T |
3751923 |
caaaagtttcttgtttttctaatgattgtaatgatgttgaagtgagagtgttgcaagagaggagaaggaagaagaacaaagtga |
3752006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 3745997 - 3746107
Alignment:
| Q |
55 |
gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac |
154 |
Q |
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|||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||| | ||||||||| |||||| ||| | ||||||| || |
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| T |
3745997 |
gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaac |
3746096 |
T |
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| Q |
155 |
gaacaaaatca |
165 |
Q |
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| T |
3746097 |
gaacaaaatca |
3746107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 3755681 - 3755789
Alignment:
| Q |
55 |
gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac |
154 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||||||| ||||||| ||| || ||||| ||||| |||| |
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| T |
3755681 |
gaagtagggttttttccactcactatgtcgtgccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggac |
3755777 |
T |
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| Q |
155 |
gaacaaaatcaa |
166 |
Q |
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||||||| |||| |
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| T |
3755778 |
gaacaaattcaa |
3755789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 3771439 - 3771569
Alignment:
| Q |
55 |
gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac |
154 |
Q |
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|||| |||||||||||||||| |||| || ||||| || ||| ||||||||||||| ||||||||| ||||||| ||| || ||||| ||||| |||| |
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| T |
3771439 |
gaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggac |
3771535 |
T |
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| Q |
155 |
gaacaaaatcaactgtgtcttgtttttctgatga |
188 |
Q |
| |
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||||||| |||| ||||| | ||||||||||| |
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| T |
3771536 |
gaacaaattcaaaagtgtcatcattttctgatga |
3771569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 25985329 - 25985271
Alignment:
| Q |
55 |
gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagctt |
113 |
Q |
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|||| |||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |
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| T |
25985329 |
gaagaagggttgtttccactaactatgtcatgccaatagaattttaaatggcttagctt |
25985271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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