View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20085_high_2 (Length: 409)
Name: NF20085_high_2
Description: NF20085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20085_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 52926176 - 52925797
Alignment:
| Q |
30 |
gcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgttcg |
129 |
Q |
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| T |
52926176 |
gcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgttcg |
52926077 |
T |
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| Q |
130 |
tgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttggagtttatgggaaaggttttaggtttaagattgagtcaaatgactctt |
229 |
Q |
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| T |
52926076 |
tgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttggagtttatgggaaaggttttaggtttaagattgagtcaaatgactctt |
52925977 |
T |
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| Q |
230 |
cagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttcttcaacttaaccaagtagtaagtatttctcaacaaacatatatactaac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925976 |
cagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttcttcaacttaaccaagtagtaagtatttctcaacaaacatatatactaat |
52925877 |
T |
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| Q |
330 |
gctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttatgagaaacttttggaggctgtgcaacct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925876 |
gctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttatgagaaacttttggaggctgtgcaacct |
52925797 |
T |
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