View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20085_high_4 (Length: 347)
Name: NF20085_high_4
Description: NF20085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20085_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 258707 - 258383
Alignment:
| Q |
1 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
258707 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctt |
258608 |
T |
|
| Q |
101 |
tgacaaaattcaagagtaaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
258607 |
tgacaaaattcaagagtaaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtag----------tttgtcaa |
258518 |
T |
|
| Q |
201 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
258517 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----a |
258423 |
T |
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| Q |
301 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
258422 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
258383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 657214 - 657538
Alignment:
| Q |
1 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
657214 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctt |
657313 |
T |
|
| Q |
101 |
tgacaaaattcaagagtaaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
657314 |
tgacaaaattcaagagtaaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtag----------tttgtcaa |
657403 |
T |
|
| Q |
201 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
657404 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----a |
657498 |
T |
|
| Q |
301 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
657499 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
657538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 842949 - 843273
Alignment:
| Q |
1 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
842949 |
agaataacttcaaatggggagtcatgatggtgtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctt |
843048 |
T |
|
| Q |
101 |
tgacaaaattcaagagtaaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
843049 |
tgacaaaattcaagagtaaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtag----------tttgtcaa |
843138 |
T |
|
| Q |
201 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
843139 |
atggaatagcagggaatcagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----a |
843233 |
T |
|
| Q |
301 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
843234 |
tataggtttcttcctaaacaataagggaggctctgtggtg |
843273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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