View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20085_high_7 (Length: 337)
Name: NF20085_high_7
Description: NF20085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20085_high_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 33827951 - 33828286
Alignment:
| Q |
2 |
gtgtagtatcataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatg |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33827951 |
gtgtagtattataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatg |
33828050 |
T |
|
| Q |
102 |
atgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33828051 |
atgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatca |
33828150 |
T |
|
| Q |
202 |
tccggtaatggctgaaaagttattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaa |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33828151 |
tccggtaatggctgaaaaattattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaa |
33828250 |
T |
|
| Q |
302 |
agaaattaaaaacttatgtatatcttaatgaaaaaa |
337 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33828251 |
agaaattaaaaacttatgtatgtcttaacgaaaaaa |
33828286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University