View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20086_low_1 (Length: 311)

Name: NF20086_low_1
Description: NF20086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20086_low_1
NF20086_low_1
[»] chr8 (33 HSPs)
chr8 (1-114)||(40918727-40918840)
chr8 (1-110)||(7147081-7147190)
chr8 (1-110)||(40058303-40058412)
chr8 (1-110)||(30999524-30999633)
chr8 (1-110)||(43275399-43275508)
chr8 (1-111)||(37345739-37345849)
chr8 (1-110)||(2539930-2540039)
chr8 (1-110)||(11174223-11174332)
chr8 (1-110)||(11646325-11646434)
chr8 (1-110)||(36068248-36068357)
chr8 (1-110)||(27035163-27035272)
chr8 (1-110)||(3585619-3585728)
chr8 (1-95)||(20546308-20546402)
chr8 (1-110)||(35866781-35866890)
chr8 (1-92)||(27563885-27563976)
chr8 (16-110)||(28568101-28568195)
chr8 (16-110)||(28575694-28575788)
chr8 (16-110)||(28562604-28562698)
chr8 (17-113)||(45400767-45400863)
chr8 (1-104)||(26628822-26628925)
chr8 (1-81)||(10180897-10180977)
chr8 (2-74)||(13880991-13881063)
chr8 (230-294)||(6100459-6100523)
chr8 (230-287)||(18374004-18374061)
chr8 (2-93)||(30906706-30906797)
chr8 (20-82)||(37510457-37510519)
chr8 (48-110)||(41305762-41305824)
chr8 (72-114)||(45278716-45278758)
chr8 (171-299)||(14666070-14666199)
chr8 (171-294)||(10535403-10535526)
chr8 (230-294)||(10927593-10927657)
chr8 (171-298)||(14846559-14846686)
chr8 (72-112)||(27034995-27035035)
[»] chr5 (35 HSPs)
chr5 (1-110)||(40886610-40886719)
chr5 (1-110)||(12806853-12806962)
chr5 (1-110)||(30720492-30720601)
chr5 (1-110)||(36561099-36561208)
chr5 (1-110)||(10285058-10285167)
chr5 (1-110)||(25773817-25773926)
chr5 (1-110)||(25683229-25683338)
chr5 (1-110)||(23097724-23097833)
chr5 (1-110)||(37900623-37900732)
chr5 (1-108)||(16983425-16983532)
chr5 (1-110)||(734339-734448)
chr5 (109-304)||(7736845-7737042)
chr5 (3-104)||(39071052-39071153)
chr5 (16-103)||(11319739-11319826)
chr5 (1-110)||(1056625-1056732)
chr5 (21-110)||(26168096-26168185)
chr5 (1-79)||(11795314-11795392)
chr5 (1-99)||(16054279-16054377)
chr5 (1-91)||(30402981-30403071)
chr5 (171-294)||(42086311-42086435)
chr5 (192-294)||(12081892-12081994)
chr5 (171-294)||(5731919-5732043)
chr5 (230-294)||(21149718-21149782)
chr5 (214-299)||(24875324-24875409)
chr5 (230-298)||(25467390-25467458)
chr5 (3-47)||(7277486-7277530)
chr5 (192-294)||(14588638-14588740)
chr5 (48-110)||(15304822-15304884)
chr5 (181-294)||(7866565-7866678)
chr5 (171-279)||(9805003-9805112)
chr5 (181-294)||(19572708-19572821)
chr5 (72-113)||(30720731-30720772)
chr5 (1-37)||(12305692-12305728)
chr5 (17-73)||(15629320-15629376)
chr5 (198-298)||(37263221-37263320)
[»] chr4 (46 HSPs)
chr4 (1-110)||(21310589-21310698)
chr4 (1-112)||(12071728-12071839)
chr4 (1-110)||(14261212-14261321)
chr4 (1-110)||(22321268-22321377)
chr4 (1-110)||(24706247-24706356)
chr4 (1-110)||(25704819-25704928)
chr4 (1-110)||(40122487-40122596)
chr4 (1-110)||(44569005-44569114)
chr4 (1-108)||(21661537-21661644)
chr4 (1-108)||(21670301-21670408)
chr4 (1-100)||(50768030-50768129)
chr4 (1-110)||(20249014-20249123)
chr4 (1-109)||(21064929-21065037)
chr4 (2-100)||(18507276-18507374)
chr4 (16-110)||(19692905-19692999)
chr4 (16-110)||(19703490-19703584)
chr4 (16-111)||(50839030-50839125)
chr4 (2-94)||(31892401-31892493)
chr4 (173-298)||(295534-295659)
chr4 (1-103)||(6128956-6129058)
chr4 (1-110)||(32543647-32543756)
chr4 (171-294)||(4736585-4736708)
chr4 (198-271)||(14859302-14859375)
chr4 (16-81)||(48652407-48652472)
chr4 (171-294)||(5472847-5472971)
chr4 (171-282)||(14124016-14124128)
chr4 (230-294)||(53599048-53599112)
chr4 (170-294)||(29895775-29895900)
chr4 (1-65)||(34324627-34324692)
chr4 (171-294)||(20128297-20128421)
chr4 (171-294)||(38166015-38166139)
chr4 (235-298)||(14567943-14568006)
chr4 (17-108)||(20714322-20714413)
chr4 (173-291)||(21429292-21429411)
chr4 (230-269)||(35359749-35359788)
chr4 (75-110)||(39295418-39295453)
chr4 (1-71)||(51777772-51777841)
chr4 (181-298)||(8889006-8889123)
chr4 (230-299)||(24850686-24850754)
chr4 (198-299)||(43458596-43458697)
chr4 (230-294)||(1446814-1446878)
chr4 (171-294)||(2559295-2559419)
chr4 (15-83)||(8735399-8735467)
chr4 (1-33)||(17038377-17038409)
chr4 (15-51)||(26906555-26906591)
chr4 (74-110)||(34324618-34324654)
[»] chr3 (45 HSPs)
chr3 (1-110)||(46694110-46694219)
chr3 (3-110)||(29375302-29375409)
chr3 (1-110)||(13365011-13365120)
chr3 (1-110)||(36881448-36881557)
chr3 (1-113)||(3383244-3383356)
chr3 (1-110)||(19241668-19241777)
chr3 (1-110)||(23087931-23088040)
chr3 (1-110)||(48820508-48820617)
chr3 (1-110)||(199023-199132)
chr3 (1-111)||(32834988-32835098)
chr3 (1-110)||(13703380-13703489)
chr3 (1-95)||(43750304-43750398)
chr3 (1-110)||(18355868-18355977)
chr3 (7-87)||(31873886-31873966)
chr3 (1-99)||(48436392-48436490)
chr3 (2-104)||(48963288-48963390)
chr3 (2-104)||(6901730-6901831)
chr3 (25-110)||(26783661-26783746)
chr3 (1-99)||(54086720-54086818)
chr3 (2-55)||(52009105-52009158)
chr3 (1-100)||(27706999-27707098)
chr3 (223-294)||(3755553-3755624)
chr3 (2-101)||(24064389-24064488)
chr3 (4-75)||(1455186-1455257)
chr3 (181-294)||(29135896-29136009)
chr3 (230-291)||(51683014-51683075)
chr3 (16-73)||(53559648-53559705)
chr3 (234-298)||(41219572-41219635)
chr3 (230-280)||(928597-928647)
chr3 (48-110)||(19912153-19912215)
chr3 (48-110)||(38806320-38806382)
chr3 (48-114)||(44276771-44276837)
chr3 (181-298)||(10040536-10040652)
chr3 (20-69)||(37293595-37293644)
chr3 (192-299)||(32873571-32873677)
chr3 (16-55)||(52805082-52805121)
chr3 (48-110)||(12095402-12095464)
chr3 (72-113)||(198852-198893)
chr3 (78-115)||(37293432-37293469)
chr3 (230-294)||(6462395-6462459)
chr3 (171-294)||(25294943-25295067)
chr3 (171-294)||(47219127-47219251)
chr3 (230-298)||(49082803-49082871)
chr3 (5-53)||(51584442-51584490)
chr3 (230-294)||(52364860-52364924)
[»] chr2 (44 HSPs)
chr2 (1-110)||(22388138-22388247)
chr2 (1-110)||(23366957-23367066)
chr2 (1-110)||(3519075-3519184)
chr2 (4-110)||(1102672-1102778)
chr2 (1-110)||(39938338-39938447)
chr2 (1-112)||(37673741-37673852)
chr2 (1-110)||(1646455-1646564)
chr2 (1-113)||(12969737-12969849)
chr2 (1-110)||(40756911-40757020)
chr2 (1-110)||(39561895-39561999)
chr2 (1-107)||(36447426-36447532)
chr2 (1-110)||(28110095-28110204)
chr2 (23-104)||(37284525-37284605)
chr2 (17-73)||(19976512-19976568)
chr2 (181-299)||(11069856-11069974)
chr2 (17-75)||(32838964-32839022)
chr2 (5-112)||(4917933-4918040)
chr2 (22-81)||(14779964-14780023)
chr2 (230-294)||(16034920-16034984)
chr2 (171-294)||(18902529-18902653)
chr2 (230-294)||(37560156-37560220)
chr2 (230-294)||(38962746-38962810)
chr2 (230-294)||(41187832-41187896)
chr2 (171-294)||(41220618-41220742)
chr2 (192-299)||(6358172-6358279)
chr2 (2-80)||(34242143-34242221)
chr2 (181-294)||(331484-331597)
chr2 (171-299)||(25540403-25540532)
chr2 (230-294)||(7747257-7747321)
chr2 (171-294)||(10823043-10823167)
chr2 (171-294)||(14169608-14169732)
chr2 (234-294)||(14853430-14853490)
chr2 (230-294)||(15234120-15234184)
chr2 (230-294)||(21286427-21286491)
chr2 (1-49)||(28401396-28401444)
chr2 (230-294)||(42770710-42770774)
chr2 (224-291)||(10106574-10106641)
chr2 (223-294)||(19976859-19976930)
chr2 (170-299)||(35946717-35946846)
chr2 (181-278)||(10026626-10026723)
chr2 (181-294)||(39201518-39201631)
chr2 (171-294)||(2550851-2550975)
chr2 (171-278)||(34130301-34130408)
chr2 (230-294)||(39806944-39807008)
[»] chr1 (56 HSPs)
chr1 (1-110)||(40783657-40783766)
chr1 (1-111)||(321794-321904)
chr1 (1-110)||(23045279-23045388)
chr1 (1-110)||(23526407-23526516)
chr1 (1-110)||(284501-284610)
chr1 (1-110)||(47037852-47037961)
chr1 (2-110)||(24771906-24772014)
chr1 (1-115)||(33082912-33083026)
chr1 (1-104)||(27210961-27211064)
chr1 (1-105)||(46771806-46771910)
chr1 (1-103)||(40562293-40562395)
chr1 (17-110)||(51064754-51064847)
chr1 (1-75)||(40261320-40261394)
chr1 (1-110)||(31003787-31003896)
chr1 (3-110)||(18396864-18396971)
chr1 (2-73)||(40052501-40052572)
chr1 (1-103)||(23166858-23166960)
chr1 (1-110)||(27143014-27143121)
chr1 (1-103)||(24876729-24876831)
chr1 (16-110)||(34458724-34458818)
chr1 (1-105)||(14925632-14925734)
chr1 (1-103)||(31061463-31061568)
chr1 (16-74)||(1749457-1749515)
chr1 (1-110)||(1837827-1837937)
chr1 (1-103)||(25929266-25929368)
chr1 (223-294)||(12744576-12744647)
chr1 (223-294)||(12755566-12755637)
chr1 (19-74)||(14350510-14350565)
chr1 (171-299)||(9659179-9659307)
chr1 (223-294)||(45726486-45726557)
chr1 (48-110)||(3943742-3943804)
chr1 (48-110)||(41959788-41959850)
chr1 (72-114)||(51064995-51065037)
chr1 (1-41)||(3657242-3657282)
chr1 (230-294)||(5855506-5855570)
chr1 (171-294)||(8763975-8764099)
chr1 (230-294)||(16263529-16263593)
chr1 (171-294)||(18649352-18649476)
chr1 (198-294)||(31734273-31734368)
chr1 (171-298)||(41663856-41663984)
chr1 (230-294)||(45361942-45362006)
chr1 (171-298)||(49078094-49078222)
chr1 (230-294)||(51437453-51437517)
chr1 (72-113)||(284330-284371)
chr1 (181-294)||(2567260-2567373)
chr1 (53-110)||(9589615-9589672)
chr1 (262-299)||(13265917-13265954)
chr1 (72-113)||(23045518-23045559)
chr1 (230-299)||(34334355-34334424)
chr1 (230-294)||(16956450-16956514)
chr1 (230-294)||(17358531-17358595)
chr1 (230-294)||(18808249-18808313)
chr1 (171-294)||(26325796-26325920)
chr1 (72-112)||(41959076-41959116)
chr1 (230-290)||(44969653-44969712)
chr1 (230-294)||(50503421-50503485)
[»] chr7 (30 HSPs)
chr7 (1-110)||(27813979-27814088)
chr7 (1-110)||(36453124-36453233)
chr7 (1-110)||(10981676-10981785)
chr7 (1-110)||(25614353-25614462)
chr7 (1-110)||(47110618-47110727)
chr7 (1-110)||(40349130-40349238)
chr7 (1-112)||(16662261-16662372)
chr7 (1-112)||(17636621-17636732)
chr7 (1-81)||(27941013-27941093)
chr7 (1-75)||(3091681-3091755)
chr7 (5-110)||(16360549-16360653)
chr7 (230-298)||(23823931-23823999)
chr7 (230-292)||(29151928-29151990)
chr7 (181-294)||(4195212-4195325)
chr7 (181-294)||(17748392-17748505)
chr7 (22-75)||(24456800-24456853)
chr7 (214-294)||(1797446-1797526)
chr7 (181-294)||(42210272-42210385)
chr7 (230-290)||(365130-365190)
chr7 (171-294)||(10047875-10047999)
chr7 (234-294)||(16802109-16802169)
chr7 (171-294)||(48804669-48804793)
chr7 (230-294)||(4228813-4228874)
chr7 (192-294)||(22973953-22974055)
chr7 (21-99)||(28200488-28200566)
chr7 (230-291)||(43862031-43862092)
chr7 (230-295)||(46414660-46414725)
chr7 (48-104)||(25059456-25059512)
chr7 (192-280)||(34659226-34659314)
chr7 (171-294)||(38578866-38578990)
[»] chr6 (33 HSPs)
chr6 (1-110)||(8626650-8626759)
chr6 (1-110)||(13757375-13757484)
chr6 (1-110)||(1605746-1605855)
chr6 (1-113)||(4129595-4129706)
chr6 (1-110)||(15064695-15064804)
chr6 (1-110)||(29260360-29260469)
chr6 (1-110)||(7761468-7761577)
chr6 (1-110)||(17942611-17942720)
chr6 (1-103)||(8235793-8235895)
chr6 (1-110)||(31559738-31559847)
chr6 (1-112)||(30734481-30734592)
chr6 (1-110)||(20398238-20398347)
chr6 (18-110)||(3798284-3798376)
chr6 (1-100)||(26860932-26861031)
chr6 (2-110)||(1814762-1814870)
chr6 (171-290)||(12606421-12606541)
chr6 (171-290)||(3601075-3601195)
chr6 (171-294)||(13468920-13469044)
chr6 (171-294)||(19089485-19089609)
chr6 (230-294)||(21898635-21898699)
chr6 (1-55)||(847831-847885)
chr6 (48-110)||(19996322-19996384)
chr6 (18-107)||(24120645-24120734)
chr6 (181-294)||(34954629-34954742)
chr6 (171-294)||(6606096-6606220)
chr6 (230-294)||(13584509-13584573)
chr6 (72-110)||(15064933-15064971)
chr6 (200-298)||(33939994-33940092)
chr6 (4-37)||(879317-879350)
chr6 (198-294)||(2271330-2271424)
chr6 (171-287)||(8938705-8938822)
chr6 (230-291)||(14107417-14107478)
chr6 (171-294)||(13036003-13036127)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-113)||(330-441)
[»] scaffold0054 (1 HSPs)
scaffold0054 (2-113)||(45622-45733)
[»] scaffold0062 (1 HSPs)
scaffold0062 (2-90)||(287-375)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-110)||(7836-7945)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-100)||(6911-7009)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-76)||(65199-65274)
[»] scaffold0056 (1 HSPs)
scaffold0056 (16-100)||(71266-71350)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-82)||(15351-15432)
[»] scaffold0939 (1 HSPs)
scaffold0939 (2-76)||(1110-1184)
[»] scaffold0170 (1 HSPs)
scaffold0170 (192-294)||(9831-9933)
[»] scaffold0257 (1 HSPs)
scaffold0257 (48-113)||(23851-23916)
[»] scaffold0635 (1 HSPs)
scaffold0635 (224-291)||(2143-2210)
[»] scaffold0005 (1 HSPs)
scaffold0005 (235-298)||(249369-249432)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40918840 - 40918727
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40918840 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 40918741  T
Q  101 ggagggagtaatat 114  Q
    ||||||||||||||    
T  40918740 ggagggagtaatat 40918727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7147081 - 7147190
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147081 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 7147180  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  7147181 ggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40058412 - 40058303
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058412 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 40058313  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  40058312 ggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30999633 - 30999524
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999633 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 30999534  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  30999533 ggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43275508 - 43275399
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275508 gtattattgacaagataataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 43275409  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  43275408 ggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37345739 - 37345849
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37345739 gtattattgacaagacaataattaatgttgcattgaaacttgaaaatgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 37345838  T
Q  101 ggagggagtaa 111  Q
    ||| |||||||    
T  37345839 ggaaggagtaa 37345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2540039 - 2539930
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2540039 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctttaaaatggacaagtattatgaaac 2539940  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  2539939 ggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11174332 - 11174223
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11174332 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgaacaagtattatgaaac 11174233  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  11174232 ggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11646434 - 11646325
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11646434 gtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 11646335  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  11646334 ggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 36068248 - 36068357
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36068248 gtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 36068347  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  36068348 ggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27035163 - 27035272
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27035163 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctccaaaatgaacaagtattatgaaac 27035262  T
Q  101 ggagggagta 110  Q
    ||||| ||||    
T  27035263 ggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3585619 - 3585728
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  3585619 gtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctctaaaatagacaagtattatgaaac 3585718  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  3585719 ggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20546402 - 20546308
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattat 95  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20546402 gtattattgacaagacaataattaatgttgcattgaaacctgaaagtgacaagtattgtgaaacaaaattattcttcaaaatggacaagtattat 20546308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35866781 - 35866890
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||| ||||| |||||||||| ||||||    
T  35866781 gtattattgataaaccaataattaatgttgaattgaaacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaatagacaagtattgtgaaac 35866880  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  35866881 ggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27563976 - 27563885
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtat 92  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||  |||||||||    
T  27563976 gtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtaatatgaaacaaaattgttctccaaaagcgacaagtat 27563885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 28568101 - 28568195
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||||||||||||||||||||||| |||||||||||||   ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28568101 caataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 28575694 - 28575788
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||||||||||||||||||||||| |||||||||||||   ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28575694 caataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 28562604 - 28562698
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||  |||||||| ||||||| ||| ||||||||||||    
T  28562604 caataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaataattcttcaaaatggataagtattgtgagacggagggagta 28562698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 45400863 - 45400767
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    |||||||||||||||||||||| || |||||||||| ||  ||||||||||||||||||| ||||  |||  |||||||||||||||||||||||||    
T  45400863 aataattaatgttgcattgaaatttaaaagtgacaaataaagtgaaacaaaattattctccaaaaacgacttgtattatgaaacggagggagtaata 45400767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26628925 - 26628822
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  |||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||| ||||   ||| ||||| ||||||    
T  26628925 gtattattgataaatcaataattaatgttgcattgaaacttgaaaatgacaaataaagtgaaacaaaattattctccaaaagcaacatgtattgtgaaac 26628826  T
Q  101 ggag 104  Q
    ||||    
T  26628825 ggag 26628822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10180977 - 10180897
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaa 81  Q
    |||||||||||||    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  10180977 gtattattgacaaattcataactaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattgttctccaaaa 10180897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13881063 - 13880991
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattc 74  Q
    ||||||| ||||  ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  13881063 tattattaacaaatcaataattaatattgcattgaaacttgaaagtgacaagtaatttgaaacaaaattattc 13880991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 6100523 - 6100459
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||    
T  6100523 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtcctt 6100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 18374061 - 18374004
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggata 287  Q
    |||||||||||||||| ||||||||  ||||||||||||| |||||||| | ||||||    
T  18374061 catgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttcccggata 18374004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 30906797 - 30906706
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtatt 93  Q
    ||||||| ||||  ||||||||||| ||||||| ||| || ||||| ||||||| ||| ||| |||||||||||  ||||  ||||||||||    
T  30906797 tattattaacaattcaataattaatattgcattaaaatttaaaagtaacaagtaatgtaaaataaaattattcttcaaaaacgacaagtatt 30906706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37510457 - 37510519
Alignment:
Q  20 aattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaat 82  Q
    ||||||| || ||||||||||| ||||||| |||||   ||||||||||||||||| ||||||    
T  37510457 aattaattttacattgaaacttaaaagtgataagtaaaatgaaacaaaattattctttaaaat 37510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 41305824 - 41305762
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| |||||||||| |||||    
T  41305824 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 45278716 - 45278758
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaatat 114  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  45278716 ttctccaaaatggacatgtattttgaaacggagggagtaatat 45278758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 299
Target Start/End: Original strand, 14666070 - 14666199
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||| | ||| |||||| |||| || ||||| ||||| ||  |||||  |||||||||||| |||  ||||||   |||| ||||||||    
T  14666070 ctttcgcaccggttttcgacccaccaactgtgggcgactaatctggcttgtgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaa 14666169  T
Q  270 tctggtattcctcggatacgtccttagaat 299  Q
     | |||||||| ||||||||||||| ||||    
T  14666170 cccggtattccccggatacgtccttggaat 14666199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 10535403 - 10535526
Alignment:
Q  171 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    |||||||||| |||||| ||  ||||| |||| ||| |||||| ||||| |  || || ||||||||||||||||| || |||||  ||||| ||| |||    
T  10535403 ctttcgcaccagtttccgacttaccaaaggtgaacgactaattcggctcatgcgtggagacatgcgcactggtcaagcggtgttcc-cctgaaaattgaa 10535501  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |  |||||||||||||||||||||    
T  10535502 ccatgtattcctcggatacgtcctt 10535526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 10927657 - 10927593
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| ||||  |||||||| | |||||||| ||| |||||||||    
T  10927657 catgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccgggtacgtcctt 10927593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 14846686 - 14846559
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| || || || ||| |  |||||  |||||||||||  ||| | ||||||  |||||||||||||    
T  14846686 ctttcgcaccgatttccgacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcactgaccaatcattgttcc-cctgagaatcgaa 14846588  T
Q  270 tctggtattcctcggatacgtccttagaa 298  Q
     | |||||||| ||| |||||||||||||    
T  14846587 cccggtattccccgggtacgtccttagaa 14846559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 27035035 - 27034995
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaat 112  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  27035035 ttctccaaaatggacatgtattttgaaacggagggagtaat 27034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40886719 - 40886610
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40886719 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 40886620  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  40886619 ggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12806962 - 12806853
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806962 gtattattgacaagacaataattaatgttgcattgaaacttgaaagagacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 12806863  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  12806862 ggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30720601 - 30720492
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720601 gtattattgacaagacaataactaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 30720502  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  30720501 ggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36561208 - 36561099
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561208 gtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 36561109  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  36561108 ggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10285167 - 10285058
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10285167 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctttaaaatagacaagtattatgaaac 10285068  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  10285067 ggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25773817 - 25773926
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25773817 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaacttattctctaaaatggacaagtattatgaaac 25773916  T
Q  101 ggagggagta 110  Q
    |||| |||||    
T  25773917 ggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25683338 - 25683229
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||    
T  25683338 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagttttatgaaacaaaattattctccaaaatggacaagtattatgaaac 25683239  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  25683238 ggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23097833 - 23097724
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23097833 gtattattgacaagacaataattaatattgcattgaaacatgaaagtaacaagtattgtgaaacaaaattattctccaaaatggacaagtattatgaaac 23097734  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  23097733 ggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37900732 - 37900623
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  37900732 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtatcgtgaaacaaaattattcttcaaaatagacaagtattatgaaac 37900633  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  37900632 ggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16983425 - 16983532
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  16983425 gtattattgaaaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattcttcaaaatagacaagtattataaaac 16983524  T
Q  101 ggagggag 108  Q
     |||||||    
T  16983525 agagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 734448 - 734339
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||    
T  734448 gtattattgataaaccaataattaatgttgtattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaagtattgtgaaac 734349  T
Q  101 ggagggagta 110  Q
    || |||||||    
T  734348 ggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 7737042 - 7736845
Alignment:
Q  109 taatatcccacttgaaatggttagaaaaaccatacttccaatgattcaaattgnnnnnnnnc-ctttcgcaccg-tttccaaccaaccaacggtggacgg 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||           ||||||||||| ||||||| ||||||||||| |||||    
T  7737042 taatatcccacttgaaatggttagaaaacccatacttccaatgattcaatttttttattttttctttcgcaccggtttccaatcaaccaacggtcgacgg 7736943  T
Q  207 ctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaattatct 304  Q
    ||||| || || ||||||||| | ||| ||||||  ||||||||||| |||||||||||||||   | |||||||||| |||||||||||||| ||||    
T  7736942 ctaatctgacttgtaagtagagatatgtgcactgaccaaacgttgtttgtcctgagaatcgaactcgatattcctcgggtacgtccttagaatgatct 7736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 39071052 - 39071153
Alignment:
Q  3 attattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgg 102  Q
    |||||||| ||  ||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||| ||||| |||||||||| |||| |||    
T  39071052 attattgataaaccaataattaatgttgcattgatacttaaaagtgacaagtaaagtgaaacaaaattattctcaaaaatagacaagtattgtgaatcgg 39071151  T
Q  103 ag 104  Q
    ||    
T  39071152 ag 39071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 11319739 - 11319826
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 103  Q
    ||||||||||| ||||||| |||| ||||||||| || ||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11319739 caataattaatattgcattaaaacctgaaagtgataaataaagtgaaacaaaattattctctaaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1056732 - 1056625
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||  |||| | ||||| |||||||||||| ||||  |||||||||| ||||||    
T  1056732 gtattattgacaaactaataattaatgttgcattgaaacttgaaagtga-tagtaat-tgaaataaaattattctccaaaagtgacaagtattgtgaaac 1056635  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  1056634 ggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 26168096 - 26168185
Alignment:
Q  21 attaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||    
T  26168096 attaatcttgcattgaaacttgaaagtgacaattaaagtgaaacaaaattattctctaaaaacgacatgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11795392 - 11795314
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaa 79  Q
    |||||||||| ||  | |||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||    
T  11795392 gtattattgataaacctataattaatgttgcattgaaacttgaaagtgataaataaagtgaaacaaaattattctctaa 11795314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16054279 - 16054377
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaa 99  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||  |  ||||| ||||||||||||| ||||  |||| ||||| |||||    
T  16054279 gtattattgacaaactaataattaatgttgcattgaaacttgaaagtgacaaccaaagtgaaccaaaattattctccaaaagcgacatgtattttgaaa 16054377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30403071 - 30402981
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagta 91  Q
    |||||||||||||  ||||||||||| ||| |||||||||| |||||||||||||   ||||| |||||||||||||||||  ||||||||    
T  30403071 gtattattgacaaaccaataattaattttgtattgaaacttaaaagtgacaagtaaaatgaaataaaattattctctaaaagcgacaagta 30402981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 42086435 - 42086311
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||||||| ||||||||  |||| ||||||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||||||| |||||||||    
T  42086335 cccggtattcctcgggtacgtcctt 42086311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 12081994 - 12081892
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| |||||||| |||||| |||||||  |||||  |||||||||||| ||| ||||||||  ||||||||||||| |  ||||||| ||||||||||    
T  12081994 accaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgtc 12081895  T
Q  292 ctt 294  Q
    |||    
T  12081894 ctt 12081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 5731919 - 5732043
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| || || |||| ||| ||||| |||||| || |||||  |||||||||||| ||| |||||||| ||||| ||||||||    
T  5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| ||| |||||||||    
T  5732019 cccggtattccccgggtacgtcctt 5732043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 21149782 - 21149718
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  ||||||||||    
T  21149782 catgcgcactggtcaaacgttgttccccctgaaaatcgaacctggtattcctcaaatacgtcctt 21149718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 24875409 - 24875324
Alignment:
Q  214 ggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaat 299  Q
    |||||||  ||||| ||||||||||||||||||||||||||  ||| ||||||||| ||| ||||| | || ||||||||| ||||    
T  24875409 ggctcgtgcgtagagacatgcgcactggtcaaacgttgttctccctaagaatcgaacctgatattctttgggtacgtccttggaat 24875324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 25467458 - 25467390
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    |||||| ||||| ||| |||||||| |||||| |||||||||| |||||||| | ||||||||||||||    
T  25467458 catgcgtactggccaatcgttgttcctcctgaaaatcgaatctagtattccttgtatacgtccttagaa 25467390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7277530 - 7277486
Alignment:
Q  3 attattgacaagacaataattaatgttgcattgaaacttgaaagt 47  Q
    |||||||||||||||||||||||| ||||||||||| || |||||    
T  7277530 attattgacaagacaataattaattttgcattgaaatttaaaagt 7277486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 14588638 - 14588740
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| |||||||| |||||  ||||| |  |||||  |||||||||||||||| |||| ||| |||||| ||||||| | | |||||| | ||||||||    
T  14588638 accaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaatcgaacccgatattccccagatacgtc 14588737  T
Q  292 ctt 294  Q
    |||    
T  14588738 ctt 14588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 15304884 - 15304822
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| | ||||||||||||||    
T  15304884 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 7866678 - 7866565
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    ||||| |||| ||||| ||||| || |||||  || ||||  |||||  ||||| |||||| ||| |||||||| ||||  |||||||| | ||||||||    
T  7866678 gtttctaacccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgttgttcctcctcggaatcgaacccggtattcc 7866579  T
Q  281 tcggatacgtcctt 294  Q
    |||| |||||||||    
T  7866578 tcgggtacgtcctt 7866565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 9805112 - 9805003
Alignment:
Q  171 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    |||||||||| |||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
T  9805112 ctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 9805013  T
Q  270 tctggtattc 279  Q
     | |||||||    
T  9805012 cccggtattc 9805003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 19572821 - 19572708
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||||||| ||||| |||| ||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| ||||| || | ||||||||    
T  19572821 gtttccaacccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacccggtattcc 19572722  T
Q  281 tcggatacgtcctt 294  Q
     |||||||||||||    
T  19572721 ccggatacgtcctt 19572708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 30720731 - 30720772
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  30720731 ttctccaaaatggacatgtattttgaaacggagggagtaata 30720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12305692 - 12305728
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaa 37  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  12305692 gtattattgacaaaacaataatcaatgttgcattgaa 12305728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15629320 - 15629376
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 73  Q
    ||||||||||| |||||||||| || ||| | |||||||  ||||||||||||||||    
T  15629320 aataattaatgctgcattgaaatttaaaaataacaagtaaagtgaaacaaaattatt 15629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 37263320 - 37263221
Alignment:
Q  198 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttaga 297  Q
    |||||||| |||||  |||||||  |||||  |||||||| ||| ||| ||||||||  ||||||||||||| | | |||||| ||| ||||||||||||    
T  37263320 ggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgttgttcc-cctgagaatcgaacccgatattccccgggtacgtccttaga 37263222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21310589 - 21310698
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310589 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 21310688  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  21310689 ggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12071728 - 12071839
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12071728 gtattattgacaagacaagaattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 12071827  T
Q  101 ggagggagtaat 112  Q
    ||||||||||||    
T  12071828 ggagggagtaat 12071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14261212 - 14261321
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261212 gtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 14261311  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  14261312 ggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22321377 - 22321268
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22321377 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatagacaagtattatgaaac 22321278  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  22321277 ggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24706356 - 24706247
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706356 gtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 24706257  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  24706256 ggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25704819 - 25704928
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704819 gtattattgacaagacaataattaatgttgcactgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 25704918  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  25704919 ggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40122596 - 40122487
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122596 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 40122497  T
Q  101 ggagggagta 110  Q
    |||| |||||    
T  40122496 ggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 44569005 - 44569114
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44569005 gtattattgacaagacaataattaatgttgcattgaaacatgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 44569104  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  44569105 ggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21661644 - 21661537
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  21661644 gtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 21661545  T
Q  101 ggagggag 108  Q
    ||||||||    
T  21661544 ggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21670408 - 21670301
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  21670408 gtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 21670309  T
Q  101 ggagggag 108  Q
    ||||||||    
T  21670308 ggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 50768030 - 50768129
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50768030 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20249123 - 20249014
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  20249123 gtattattgacaagacaataattaatattgcattgaaacttgaaagagacaggtattgtgaaacaaaattattctccaaaatggacaagtattatgaaac 20249024  T
Q  101 ggagggagta 110  Q
    |||| |||||    
T  20249023 ggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 21064929 - 21065037
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21064929 gtattattgtcaagacaataattaatgttgcattgaaatttgaaagcgataagtattgtgaaacaaaattattctctaaaatgaacaagtattatgaaac 21065028  T
Q  101 ggagggagt 109  Q
    |||||||||    
T  21065029 ggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 18507374 - 18507276
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||  |||||||||| ||||||    
T  18507374 tattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagaaatgtgaaacaaaattatgctctaaaagcgacaagtattgtgaaac 18507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 19692905 - 19692999
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19692905 caataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 19703490 - 19703584
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19703490 caataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 50839125 - 50839030
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 111  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||  |||||||||| ||||| |||||||||||    
T  50839125 caataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagtaa 50839030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 31892401 - 31892493
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtatta 94  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||| || || |||||||||||    
T  31892401 tattattgacaagacaataattaatgttacattaaaacttaaaagtgacaagtattgtaaaacaaaattattctccaagatagacaagtatta 31892493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 295534 - 295659
Alignment:
Q  173 ttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 271  Q
    ||||||||| |||| |||| |||||||||||||| ||||| ||| ||||  |||||  |||||||||||| |||||||||||| | ||| ||||||||||    
T  295534 ttcgcaccggtttcaaacccaccaacggtggacgactaatctggttcgtgcgtagaggcatgcgcactggccaaacgttgttcct-ctgggaatcgaatc 295632  T
Q  272 tggtattcctcggatacgtccttagaa 298  Q
    ||||||||| |||||||||||||||||    
T  295633 tggtattccccggatacgtccttagaa 295659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6129058 - 6128956
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||  ||||  |||| ||||| ||||||    
T  6129058 gtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattcttcaaaagcgacatgtattgtgaaac 6128959  T
Q  101 gga 103  Q
    |||    
T  6128958 gga 6128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32543647 - 32543756
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||| ||||||  ||||||||||||| ||||| |||||||||||| |||||||   |||||||||||||||||||||||  |||||||||| ||||||    
T  32543647 gtattaatgacaaaccaataattaatgtcgcattaaaacttgaaagtaacaagtaaaatgaaacaaaattattctctaaaagcgacaagtattgtgaaac 32543746  T
Q  101 ggagggagta 110  Q
     || ||||||    
T  32543747 agaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 4736708 - 4736585
Alignment:
Q  171 ctttcgcaccgtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaat 270  Q
    |||||||||||||||| ||| ||||||||||| || |||||| |||| ||| |||||  ||||| || ||| |||||||||||    |||||||| |||     
T  4736708 ctttcgcaccgtttccgacccaccaacggtgggcgactaattcggcttgtacgtagaggcatgcacattggccaaacgttgtttccactgagaattgaac 4736609  T
Q  271 ctggtattcctcggatacgtcctt 294  Q
    | |||||||||||| ||| |||||    
T  4736608 ccggtattcctcgggtacatcctt 4736585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 14859375 - 14859302
Alignment:
Q  198 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 271  Q
    |||||| | ||||| ||||||||  ||||| ||||||||||||||||||| |||||| |||||| |||||||||    
T  14859375 ggtggatgactaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatc 14859302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 48652407 - 48652472
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaa 81  Q
    ||||||||||||| ||||| |||||| ||||| |||||||  ||||||||||||||||||| ||||    
T  48652407 caataattaatgtcgcattaaaactttaaagtaacaagtaaagtgaaacaaaattattctccaaaa 48652472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 5472847 - 5472971
Alignment:
Q  171 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    |||||||||| |||| | ||| ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||| |||||||   |||||||||| ||    
T  5472847 ctttcgcaccagttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaaa 5472946  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |||||||||| |||||||||||||    
T  5472947 cctggtattccccggatacgtcctt 5472971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 14124128 - 14124016
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||||||| ||||| ||||  || |||||  |||||||  |||||  |||||||||||| |||| |||||||  |||| ||||||||    
T  14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcactggccaaatgttgttccccctgggaatcgaa 14124029  T
Q  270 tctggtattcctc 282  Q
     ||||||||||||    
T  14124028 cctggtattcctc 14124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 53599112 - 53599048
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| |||||||||||| ||||| |||||||| | |||||||| ||| |||||||||    
T  53599112 catgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgtcctt 53599048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 29895900 - 29895775
Alignment:
Q  170 cctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcga 268  Q
    |||||||||||| ||||| | | ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| |||||||    
T  29895900 cctttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 29895801  T
Q  269 atctggtattcctcggatacgtcctt 294  Q
    | | |||||||| |||||||||||||    
T  29895800 acccggtattccccggatacgtcctt 29895775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34324692 - 34324627
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaact-tgaaagtgacaagtattgtgaaaca 65  Q
    ||||||||||||||| ||| |||||||||||||||||||| | |||  |||||||||| |||||||    
T  34324692 gtattattgacaagaaaatcattaatgttgcattgaaactctaaaatggacaagtattatgaaaca 34324627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 20128421 - 20128297
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||  ||| ||||| |||||||| ||||| | ||||||  ||| |  |||||||||||| ||| | ||||||  |||||||||||||    
T  20128421 ctttcgcaccggtttctgacccaccaatggtggacgactaatctagctcgtgcgtaaaggcatgcgcactggccaagcattgttccccctgagaatcgaa 20128322  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |  ||||||| |||||||||||||    
T  20128321 cccagtattccccggatacgtcctt 20128297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 38166139 - 38166015
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||| ||||||||  |||| ||||| ||    
T  38166139 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaa 38166040  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |  ||||||| |||||||||||||    
T  38166039 cccagtattccccggatacgtcctt 38166015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 14568006 - 14567943
Alignment:
Q  235 gcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    ||||||||||| |||| |||  ||||||||||||| |||||||||| |  ||||||||||||||    
T  14568006 gcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaa 14567943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 20714413 - 20714322
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 108  Q
    |||||||||||||||||||||| || ||| ||| || || | ||||| ||| |||||||||||||  ||||  |||| ||||||| ||||||    
T  20714413 aataattaatgttgcattgaaatttaaaaatgataaataatatgaaataaatttattctctaaaagtgacagatattgtgaaacgtagggag 20714322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 21429411 - 21429292
Alignment:
Q  173 ttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 271  Q
    ||||||||| ||||| ||| ||||| |||||||| ||| | || |||||  |||||  ||||||||||||  |||||||||||  ||| | ||||||| |    
T  21429411 ttcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacc 21429312  T
Q  272 tggtattcctcggatacgtc 291  Q
     | |||||||||||||||||    
T  21429311 cgatattcctcggatacgtc 21429292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 35359788 - 35359749
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  35359788 catgcgcactggtcaaacgttgttccccctgagaatcgaa 35359749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  75 tctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 51777772 - 51777841
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaatta 71  Q
    |||||||||||||  ||||||||||||||||| |  ||||| |||||||||||||  || |||||||||||    
T  51777772 gtattattgacaaaccaataattaatgttgcact-taacttaaaagtgacaagtaaagtaaaacaaaatta 51777841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 8889123 - 8889006
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||  |||  |||||||  |||  |||||||| | ||||||||    
T  8889123 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaagtgttgttccccctaggaatcgaacccggtattcc 8889024  T
Q  281 tcggatacgtccttagaa 298  Q
     |||||||||||||||||    
T  8889023 ccggatacgtccttagaa 8889006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 24850686 - 24850754
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaat 299  Q
    ||||||||||||||||  |||||||  ||||| ||| |||||||||||| | ||||||||||||| ||||    
T  24850686 catgcgcactggtcaagtgttgttcc-cctgataattgaatctggtatttcccggatacgtccttggaat 24850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 43458697 - 43458596
Alignment:
Q  198 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttaga 297  Q
    |||||||| |||||  |||||||  |||||  |||||||||||| ||| |||| ||| ||||| ||||||||||  ||||||| |  |||||||||| ||    
T  43458697 ggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgttcttcctcctgggaatcgaatccagtattccccaaatacgtccttgga 43458598  T
Q  298 at 299  Q
    ||    
T  43458597 at 43458596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 1446878 - 1446814
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| |||  |||||||  |||| |||||||| | |||||||| |||||||||||||    
T  1446878 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtcctt 1446814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 2559419 - 2559295
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||||||||  ||||  |||| ||  |||||  |||||||||||| ||| |||||||| ||||   |||||||    
T  2559419 ctttcgcaccggtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgttcctcctagaaatcgaa 2559320  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
    || |||||||| | | |||||||||    
T  2559319 tccggtattccccaggtacgtcctt 2559295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 8735467 - 8735399
Alignment:
Q  15 acaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatg 83  Q
    |||||| ||||| ||||||||||  ||||||||||||| ||    ||||||||||| ||||||||||||    
T  8735467 acaatatttaatattgcattgaactttgaaagtgacaattaaatagaaacaaaatttttctctaaaatg 8735399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17038409 - 17038377
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcat 33  Q
    |||||||||| ||||||||||||||||||||||    
T  17038409 gtattattgataagacaataattaatgttgcat 17038377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 26906555 - 26906591
Alignment:
Q  15 acaataattaatgttgcattgaaacttgaaagtgaca 51  Q
    |||||| |||||||||||||||| |||||||||||||    
T  26906555 acaatatttaatgttgcattgaaccttgaaagtgaca 26906591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  74 ctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46694219 - 46694110
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46694219 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 46694120  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  46694119 ggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 29375302 - 29375409
Alignment:
Q  3 attattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29375302 attattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgg 29375401  T
Q  103 agggagta 110  Q
    ||||||||    
T  29375402 agggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13365011 - 13365120
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13365011 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 13365110  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  13365111 ggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 36881448 - 36881557
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881448 gtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 36881547  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  36881548 ggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3383244 - 3383356
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3383244 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattataaaac 3383343  T
Q  101 ggagggagtaata 113  Q
    | | |||||||||    
T  3383344 gaaaggagtaata 3383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19241777 - 19241668
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19241777 gtattattgacaagtcaataattaatgttgcattgaaacttaaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 19241678  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  19241677 ggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23088040 - 23087931
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  23088040 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctttaaaatcgacaagtattatgaaac 23087941  T
Q  101 ggagggagta 110  Q
    ||||| ||||    
T  23087940 ggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 48820508 - 48820617
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttttaaaatggacaagtattatgaaac 48820607  T
Q  101 ggagggagta 110  Q
    ||||| ||||    
T  48820608 ggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 199023 - 199132
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||     
T  199023 gtattattgacaaaacaataattaatgttgcattgaaacttgaaaatgacaaatattgtgaaacaaaattattttctaaaatggacaactattatgaaat 199122  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  199123 ggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32835098 - 32834988
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||||    
T  32835098 gtattattgacaaaacaatacttaatgttgcattgaaacttgaaaatgacaagtactatgaaacgaaattattctctacaatggacaagtattatgaaac 32834999  T
Q  101 ggagggagtaa 111  Q
    |||||||||||    
T  32834998 ggagggagtaa 32834988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13703380 - 13703489
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||  | |||||||||||||||||||||    
T  13703380 gtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaatttattcttcagaatggacaagtattatgaaac 13703479  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  13703480 ggatggagta 13703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43750304 - 43750398
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||    
T  43750304 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgagaaaccaaattattctaaaaaatggacaagtattat 43750398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18355977 - 18355868
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||    
T  18355977 gtattattgataaatcaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 18355878  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  18355877 ggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 31873966 - 31873886
Alignment:
Q  7 ttgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggaca 87  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31873966 ttgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaataaaattattctctaaaatggaca 31873886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 48436392 - 48436490
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaa 99  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||| |||| |||||    
T  48436392 gtattattgacaagctaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattctccaaaagtgacaaatattgtgaaa 48436490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 48963288 - 48963390
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| || |||| ||||| |||||||||||||||||| || ||||| |||||| ||    
T  48963288 tattattgacaagacaataattaatgttgcattgaaacttaaaaatgataaatattatgaaataaaattattctctaaaatagataagtaatatgaatcg 48963387  T
Q  102 gag 104  Q
    |||    
T  48963388 gag 48963390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 6901730 - 6901831
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    ||||||||| ||  |||| ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||| |||| |||||||    
T  6901730 tattattgataaatcaatgattaatgttgcattgaaacttaaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaa-tattgtgaaacg 6901828  T
Q  102 gag 104  Q
    |||    
T  6901829 gag 6901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 26783661 - 26783746
Alignment:
Q  25 atgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||| | ||||||||| ||||    
T  26783661 atgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctttaaaatagacaagtattgtaaaacggaggaagta 26783746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 54086720 - 54086818
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaa 99  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||| ||   |||||||||| ||||||| |||||||||||||||| |||||    
T  54086720 gtattattgataaatcaataattaatgttgtattgaaacttgaaagtgacaaataaaatgaaacaaaagtattctccaaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 52009158 - 52009105
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagta 55  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52009158 tattattgacaagacaataattaatgttgcatcgaaacttgaaagtgacaagta 52009105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27707098 - 27706999
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||| |||| ||| |||||||||| || |||||||||| ||||||||| |  | |||||| || |||||||||||    
T  27707098 gtattattgacaagacaatagttaatgttacattaaaatttgaaagtgataaatattgtgaaataaaattatttttcagaatggataaatattatgaaac 27706999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 3755624 - 3755553
Alignment:
Q  223 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||   |||||||| |||||||||||||    
T  3755624 gtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaagtcggtattccccggatacgtcctt 3755553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 24064389 - 24064488
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    ||||||||| ||  |||||||||||||| |||| |||||||||||||||| |||  |||||| |||||||||||| ||||  |||| ||||| |||||||    
T  24064389 tattattgataaaccaataattaatgttacattaaaacttgaaagtgacatgtaaagtgaaataaaattattctccaaaaacgacatgtattgtgaaacg 24064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 1455257 - 1455186
Alignment:
Q  4 ttattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 75  Q
    ||||||||||  ||||||||||||||||||||||| | ||||||||||||||  || ||||||| |||||||    
T  1455257 ttattgacaaaccaataattaatgttgcattgaaattggaaagtgacaagtaaagtaaaacaaatttattct 1455186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 29136009 - 29135896
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||||||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| |||||||||| ||||||||    
T  29136009 gtttccaacccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtattcc 29135910  T
Q  281 tcggatacgtcctt 294  Q
     |||||||||||||    
T  29135909 ccggatacgtcctt 29135896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 51683014 - 51683075
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    |||||||||||||||| ||||||||  |||| |||||||| |||||||||| ||||||||||    
T  51683014 catgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgtc 51683075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 53559705 - 53559648
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 73  Q
    |||| ||||||||||||||||||||||| |||||||||||   |||||||||||||||    
T  53559705 caatgattaatgttgcattgaaacttgagagtgacaagtaaattgaaacaaaattatt 53559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 41219635 - 41219572
Alignment:
Q  234 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    |||||||| |||||||||||| ||||||||||||||  ||||||||| || ||||||||||||||    
T  41219635 cgcactggccaaacgttgttcctcctgagaatcgaacttggtattcc-cgtatacgtccttagaa 41219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 928647 - 928597
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    ||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  928647 catgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattcc 928597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 19912153 - 19912215
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19912153 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 38806320 - 38806382
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  38806320 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 44276837 - 44276771
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 114  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| |||||||||| |||||||||    
T  44276837 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagtaatat 44276771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 10040652 - 10040536
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||||||| ||||| |||||||| | | |  |||||||  |||||  |||||||||||| ||| ||||||||  ||||||||||||| | | ||||||    
T  10040652 gtttccaacccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcc-cctgagaatcgaacccgatattcc 10040554  T
Q  281 tcggatacgtccttagaa 298  Q
     ||| |||||||||||||    
T  10040553 ccgggtacgtccttagaa 10040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 37293595 - 37293644
Alignment:
Q  20 aattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaat 69  Q
    ||||||||||||||||||||||||||| ||||||||   |||||||||||    
T  37293595 aattaatgttgcattgaaacttgaaagggacaagtaaaatgaaacaaaat 37293644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 32873571 - 32873677
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| ||||| || ||||| |||||| || |||||  |||| ||||||||||| ||||||||  |||  |||||||| |||||||||| ||| ||||||    
T  32873571 accaaaggtgggcgactaatctggctcatacgtagaggcatgtgcactggtcaagcgttgttctccctaggaatcgaacctggtattcc-cgggtacgtc 32873669  T
Q  292 cttagaat 299  Q
    ||| ||||    
T  32873670 cttggaat 32873677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 52805121 - 52805082
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagta 55  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  52805121 caataataaatgttgcatcgaaacttgaaagtgacaagta 52805082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 12095402 - 12095464
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   ||||||||||||||||  |||| ||||||||||||||||    
T  12095402 gacatgtattttgaaacaaaaaatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 198893 - 198852
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  198893 ttctccaaaatggacatgtattttgaaacggagggagtaata 198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 37293469 - 37293432
Alignment:
Q  78 aaaatggacaagtattatgaaacggagggagtaatatc 115  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagtattatc 37293432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 6462459 - 6462395
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| ||||||||  |||| |||||||| | |||||||| | |||||||||||    
T  6462459 catgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgtcctt 6462395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 25295067 - 25294943
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||  ||||| |   ||||  |||||||||||| |||  ||||||   || ||||||| ||    
T  25295067 ctttcgcaccggtttccaacccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttccccagagaatcaaa 25294968  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| |||||||||||||    
T  25294967 cccggtattccccggatacgtcctt 25294943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 47219251 - 47219127
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| | ||| |||||||| |||||  ||||| |  |||||  |||||||||| | ||| |||||||   | || ||||||||    
T  47219251 ctttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatcgaa 47219152  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |||||||||| |||||||||||||    
T  47219151 cctggtattccccggatacgtcctt 47219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 49082871 - 49082803
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    ||||||||||||  || ||||||||  |||| ||||||||   |||||||| |||||||||||||||||    
T  49082871 catgcgcactggctaagcgttgttctccctgggaatcgaactcggtattccccggatacgtccttagaa 49082803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 51584442 - 51584490
Alignment:
Q  5 tattgacaagacaataattaatgttgcattgaaacttgaaagtgacaag 53  Q
    ||||||||| ||||||||||||||| |||||||| |||||  |||||||    
T  51584442 tattgacaaaacaataattaatgttacattgaaatttgaatatgacaag 51584490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 52364860 - 52364924
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||| |||||||| | ||| ||||||||   |||||||| ||| |||||||||    
T  52364860 catgcgcactggtcaagcgttgttccttctgggaatcgaactcggtattccccgggtacgtcctt 52364924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22388247 - 22388138
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22388247 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 22388148  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  22388147 ggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23366957 - 23367066
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23366957 gtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 23367056  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  23367057 ggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3519075 - 3519184
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3519075 gtattattgacaagacaataattaatgttacattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 3519174  T
Q  101 ggagggagta 110  Q
    ||||| ||||    
T  3519175 ggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 1102672 - 1102778
Alignment:
Q  4 ttattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1102672 ttattgacaagacaataattaatgttgcattgaaacttgaaagtgacgagtattgtgaaacaaaattattctctcaaatggacaagtattatgaaacgga 1102771  T
Q  104 gggagta 110  Q
    |||||||    
T  1102772 gggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39938338 - 39938447
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39938338 gtattattgacaagacaataattaatgttgcattaaaacttaaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattataaaac 39938437  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  39938438 ggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37673852 - 37673741
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  37673852 gtattattgacaagacaataattaatgttgcattgaaacttggaagtgacaagtattttgaaacaaagttattctctaaaatggacaagtattatgaaac 37673753  T
Q  101 ggagggagtaat 112  Q
    ||| ||||||||    
T  37673752 ggaaggagtaat 37673741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1646455 - 1646564
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1646455 gtattattgacaagataatacttaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaaattattctctaaaatggacaggtattatgaaac 1646554  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  1646555 ggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12969849 - 12969737
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12969849 gtattattgagaagacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattctccaaaatggacaagtattatgaaac 12969750  T
Q  101 ggagggagtaata 113  Q
    |||||||||||||    
T  12969749 ggagggagtaata 12969737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40757020 - 40756911
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||    
T  40757020 gtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaactaaagtgaaacaaaattattctccaaaatggacaagtattatgaaac 40756921  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  40756920 ggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39561999 - 39561895
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  ||||||||||||||||||||||| || ||||||||||     ||||||||||||||||||| ||||  |||| ||||| ||||||    
T  39561999 gtattattgacaaaccaataattaatgttgcattgaaatttaaaagtgacaa-----gtgaaacaaaattattctccaaaaacgacatgtattgtgaaac 39561905  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  39561904 ggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36447426 - 36447532
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||||||||  ||||||||||| ||||||||||| | ||  ||||||||||||||||||||||||  |||| ||||| ||||||    
T  36447426 gtattattgataaaccaataattaacattgcattgaaatttgaaagtgacgaataaagtgaaacaaaattattctctaaaagcgacatgtattgtgaaac 36447525  T
Q  101 ggaggga 107  Q
    |||||||    
T  36447526 ggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28110204 - 28110095
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  |||||||||||||||||||||||||||||| ||||||||| ||||||||||  || ||||| ||||  || || |||| ||||||    
T  28110204 gtattattgataaaccaataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaagttttttctccaaaaacgataaatattgtgaaac 28110105  T
Q  101 ggagggagta 110  Q
    ||||| ||||    
T  28110104 ggaggaagta 28110095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 37284605 - 37284525
Alignment:
Q  23 taatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 104  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||| ||||  || ||||||| ||||||||||    
T  37284605 taatgttgcattgaaacttgaaaatgacaagtaaagtgaaacaaaattattctccaaaagaga-aagtattgtgaaacggag 37284525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 19976512 - 19976568
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 73  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  19976512 aataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattatt 19976568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 11069974 - 11069856
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| |||||||||||||| ||||||  ||||||  |||||   ||||||||||| ||||||||||||  |||  |||||||| ||||||||||    
T  11069974 gtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgttccccctcggaatcgaacctggtattcc 11069875  T
Q  281 tcggatacgtccttagaat 299  Q
     ||| ||||||||| ||||    
T  11069874 ccgggtacgtccttggaat 11069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 32839022 - 32838964
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 75  Q
    |||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||    
T  32839022 aataattaatattgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattct 32838964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 4917933 - 4918040
Alignment:
Q  5 tattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 104  Q
    |||||||||| ||||||||||||||| ||| ||| | |||||||||||||| |||||| ||||||| || |  ||||  ||||| |||| |||||||||     
T  4917933 tattgacaagccaataattaatgttgaattaaaattcgaaagtgacaagtaatgtgaagcaaaattgtttttcaaaaatgacaaatattgtgaaacggat 4918032  T
Q  105 ggagtaat 112  Q
    | ||||||    
T  4918033 gaagtaat 4918040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 14779964 - 14780023
Alignment:
Q  22 ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaa 81  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||||||||||| ||||    
T  14779964 ttaatcttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaa 14780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 16034984 - 16034920
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| |||||||||| ||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  16034984 catgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgtcctt 16034920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 18902529 - 18902653
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||||| || ||||| ||||||||  ||||| ||| ||||||||||||| ||||||||  | || ||||||||    
T  18902529 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcgaa 18902628  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| ||  |||||||||    
T  18902629 cccggtattccccgagtacgtcctt 18902653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 37560220 - 37560156
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||  ||||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  37560220 catgcgcactgaccaaacgttgttccccttgagaatcgaacctggtattcctcgggtacgtcctt 37560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 38962810 - 38962746
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| |||||| ||||||| | |||||||| |||||||||||||    
T  38962810 catgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtattccccggatacgtcctt 38962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 41187896 - 41187832
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||| |||||||  |||| ||||| ||||  ||||||||||||||||||||||    
T  41187896 catgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtcctt 41187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 41220742 - 41220618
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| || || |||| ||| |||||| ||||| |  |||||  |||||||||||| ||| |||||||| ||||| ||||||||    
T  41220742 ctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 41220643  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| ||| |||||||||    
T  41220642 cccggtattccccgggtacgtcctt 41220618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 6358172 - 6358279
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  ||||  |||||||||||||||||| ||||||||||    
T  6358172 accaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccggatacgtc 6358271  T
Q  292 cttagaat 299  Q
    ||| ||||    
T  6358272 ctttgaat 6358279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 34242143 - 34242221
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaa 80  Q
    ||||||||| ||  ||||| ||||| ||||||| |||||| |||||||| ||||   ||||||||||||||||||||||    
T  34242143 tattattgataaaccaatatttaatattgcattaaaacttaaaagtgaccagtaaaatgaaacaaaattattctctaaa 34242221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 331597 - 331484
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||||||| ||||| ||||| || |||||  ||||| |  |||||| |||||||||||| |||  |||||||  |||| |||||||| | ||||||||    
T  331597 gtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattcc 331498  T
Q  281 tcggatacgtcctt 294  Q
     ||| |||||||||    
T  331497 ccgggtacgtcctt 331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 299
Target Start/End: Original strand, 25540403 - 25540532
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  |||||||  |||||  |||||||||||| ||| ||||||||  |||  ||||||||    
T  25540403 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaa 25540502  T
Q  270 tctggtattcctcggatacgtccttagaat 299  Q
     |  ||||||| | ||||||||||| ||||    
T  25540503 cccagtattccccagatacgtccttggaat 25540532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 7747321 - 7747257
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| |||||| |||||||||||| ||||  |||||||| | |||||||| |||||||||||||    
T  7747321 catgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgtcctt 7747257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 10823167 - 10823043
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| || || ||||| || |||||  |||||||  |||||  |||||||||||| ||| |||||||| ||||| ||||| ||    
T  10823167 ctttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcaaa 10823068  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| ||| |||||||||    
T  10823067 cccggtattccccgggtacgtcctt 10823043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 14169608 - 14169732
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||| |||| |||||  ||||| |  ||||| |||||||||||||||||  |||||||  || ||||||||||    
T  14169608 ctttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaa 14169707  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||| || ||||||||||    
T  14169708 cccgatattccccgaatacgtcctt 14169732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 14853430 - 14853490
Alignment:
Q  234 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||| |||| |||||||  ||||| |||||||||||||||||| ||||||| |||||    
T  14853430 cgcactggccaaaagttgttccccctgaaaatcgaatctggtattccccggatacatcctt 14853490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 15234120 - 15234184
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||||||||||||||  |||||||  ||||||||||||| || ||||||| ||| |||||||||    
T  15234120 catgcgcactggtcaagtgttgttccccctgagaatcgaacctagtattccccgggtacgtcctt 15234184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 21286491 - 21286427
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||| |||||||   |||| |||||||| | |||||||| |||||||||||||    
T  21286491 catgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtattccccggatacgtcctt 21286427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28401444 - 28401396
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtga 49  Q
    |||||||||||||  ||||||||||||| || |||||||||||||||||    
T  28401444 gtattattgacaaatcaataattaatgtggccttgaaacttgaaagtga 28401396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 42770710 - 42770774
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| ||||||||  ||||||||| ||| | |||||| |||||||||||||||    
T  42770710 catgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgtcctt 42770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 10106641 - 10106574
Alignment:
Q  224 tagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| ||||||| ||  |||| |||||||| | |||||||||||||| |||||| ||||||||||||    
T  10106641 tagaagcatgcgcgctaatcaagcgttgttccttctgagaatcgaatccggtatttctcggatacgtc 10106574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 19976859 - 19976930
Alignment:
Q  223 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| ||||||||||||  |||||||| |||  ||||| ||||||| | |||||||| |||||||||||||    
T  19976859 gtagagacatgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgtcctt 19976930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 35946846 - 35946717
Alignment:
Q  170 cctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcga 268  Q
    ||||||||||| |||||| ||| ||||| |||||||| |||||  |||||||  |||||  ||||| || ||| ||| ||||||||  |||  |||||||    
T  35946846 cctttcgcaccagtttccgacccaccaatggtggacgactaatccggctcgtgcgtagaggcatgcacaatggccaagcgttgttcc-cctaggaatcga 35946748  T
Q  269 atctggtattcctcggatacgtccttagaat 299  Q
    |   |||||||| ||||||||||||||||||    
T  35946747 actcggtattccccggatacgtccttagaat 35946717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 10026626 - 10026723
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtatt 278  Q
    |||||| ||| ||||| ||||| || |||||  ||||| |  |||||  |||||||||||| ||||||||||||  ||||||||||||| | ||||||    
T  10026626 gtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatcgaacccggtatt 10026723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 39201518 - 39201631
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| ||||| |||| ||| |||||  ||||| |  |||||  ||||| |||||| ||||| ||||||  ||||||||||||||  ||||||||    
T  39201518 gtttccgacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacattgttccccctgagaatcgaattcggtattcc 39201617  T
Q  281 tcggatacgtcctt 294  Q
    |||  |||||||||    
T  39201618 tcgagtacgtcctt 39201631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 2550975 - 2550851
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||| ||||| |||||  |||| || |||||  ||||| |  ||||| |||||||||||||  ||  ||||||| ||||| ||||||||    
T  2550975 ctttcgcaccggttttcaacccaccaaaagtgggcgactaatccggctcatgcgtagagacatgcgcactggctaagtgttgttcctcctgggaatcgaa 2550876  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||| |||||||||||||    
T  2550875 cccgatattccccggatacgtcctt 2550851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 34130301 - 34130408
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| | | ||||| ||| |||| ||||| |||||| |  ||||| ||||| ||| |||||||||||||||| |||||| |||||||    
T  34130301 ctttcgcaccgatttccgatctaccaatggtagacgactaatctggctcatgcgtagagacatgtgcaatggtcaaacgttgttc-tcctgaaaatcgaa 34130399  T
Q  270 tctggtatt 278  Q
     ||| ||||    
T  34130400 cctgatatt 34130408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 39806944 - 39807008
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| |||||||||||  || || |||||||| | |||||||| ||| |||||||||    
T  39806944 catgcgcactggccaaacgttgtttctcttgggaatcgaacccggtattccccgggtacgtcctt 39807008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 56)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40783766 - 40783657
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783766 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 40783667  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  40783666 ggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 321794 - 321904
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  321794 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaaatattctctaaaatggacaagtattatgaaac 321893  T
Q  101 ggagggagtaa 111  Q
    |||||||||||    
T  321894 ggagggagtaa 321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23045388 - 23045279
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045388 gtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 23045289  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  23045288 ggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23526407 - 23526516
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23526407 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttcaaaatggacaagtattatgaaac 23526506  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  23526507 ggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 284501 - 284610
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  284501 gtattattgataagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 284600  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  284601 ggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 47037961 - 47037852
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  47037961 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaattattctttaaaatagacaagtattatgaaac 47037862  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  47037861 ggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 24772014 - 24771906
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    ||||||||| || |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24772014 tattattgaaaaaacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 24771915  T
Q  102 gagggagta 110  Q
    |||||||||    
T  24771914 gagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 33082912 - 33083026
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33082912 gtattattgagaagacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattctttaaaatggacaagtattatgaaac 33083011  T
Q  101 ggagggagtaatatc 115  Q
    |||||||||| ||||    
T  33083012 ggagggagtattatc 33083026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27211064 - 27210961
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  27211064 gtattattgacaagacaataattaatgttgcattgaaacttaaatgtgacaagtattgtgaaacaaaattattcttaaaaatggacaaatattatgaaac 27210965  T
Q  101 ggag 104  Q
    ||||    
T  27210964 ggag 27210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46771806 - 46771910
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  46771806 gtattattgacaagaaaataattaatgttacattgaaacttgaaagtgataagtattgtgaaacaaaattattcttcaaaatgaacaagtattatgaaac 46771905  T
Q  101 ggagg 105  Q
    |||||    
T  46771906 ggagg 46771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40562395 - 40562293
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||||| ||||    
T  40562395 gtatcattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaatcattcttcaaaatggacaagtattataaaac 40562296  T
Q  101 gga 103  Q
    |||    
T  40562295 gga 40562293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 51064847 - 51064754
Alignment:
Q  17 aataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  51064847 aataattaacgttgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40261394 - 40261320
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 75  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40261394 gtattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattct 40261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31003896 - 31003787
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||| |||||  ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||  || ||||||| ||||||    
T  31003896 gtattatggacaaaccaacaattaatgttgcattgaaacttgaaagtggcaagtaatgtgaaacaaaattattctccaaaagcgataagtattgtgaaac 31003797  T
Q  101 ggagggagta 110  Q
     |||||||||    
T  31003796 agagggagta 31003787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 18396864 - 18396971
Alignment:
Q  3 attattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgg 102  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||||| ||||   ||||||||| ||||| ||    
T  18396864 attattgaaaagtcaataattaatgttgcattgaaacttgaaagtgacaaattatgtaaaacaaaattattctccaaaagcaacaagtattgtgaaatgg 18396963  T
Q  103 agggagta 110  Q
    ||||||||    
T  18396964 agggagta 18396971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 40052572 - 40052501
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40052572 tattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattatt 40052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23166960 - 23166858
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||| | || || |||||||||||||||||||||||||  ||| |||||| ||||||    
T  23166960 gtattattgacaaatcaataattaatgttgtattgaaacttgaaagtaataaataatgtgaaacaaaattattctctaaaagcgacgagtattgtgaaac 23166861  T
Q  101 gga 103  Q
    |||    
T  23166860 gga 23166858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27143121 - 27143014
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  ||||||||||||||| ||||||||||||  |||||||||| |||||||||||||||||||| ||||  ||||| ||||||||| |    
T  27143121 gtattattgacaaaccaataattaatgttgtattgaaacttga--gtgacaagtaatgtgaaacaaaattattctccaaaagcgacaattattatgaagc 27143024  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  27143023 ggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24876729 - 24876831
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||   |||||||||||||||||| ||||  |||||||||| ||| ||    
T  24876729 gtattattgacaaaccaataattaatgtcgcattgacacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaaacgacaagtattgtgagac 24876828  T
Q  101 gga 103  Q
    |||    
T  24876829 gga 24876831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 34458818 - 34458724
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||  ||||  |||| ||||||||| ||||||    
T  34458818 caataattaatgttgcatcgaaacttgaaagtgacaagtaaagtgaaacaaaattattctccaaaagcgacatatattgtgaaacggaaggagta 34458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 14925632 - 14925734
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  |||||  ||| |||||||||||||||||||  ||||||||  ||||||||||||||| ||||||||  |||||||||| ||||||    
T  14925632 gtattattgacaaaccaata--taaggttgcattgaaacttgaaaacgacaagtaaagtgaaacaaaattatgctctaaaaacgacaagtattgtgaaac 14925729  T
Q  101 ggagg 105  Q
    |||||    
T  14925730 ggagg 14925734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31061568 - 31061463
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgaca---agtattgtgaaacaaaattattctctaaaatggacaagtattatga 97  Q
    ||||||||| |||  |||||||||||||||||||||||||||| |||||||   |||| ||||||| ||||||||| || ||||  |||||||||| |||    
T  31061568 gtattattgtcaaaccaataattaatgttgcattgaaacttgagagtgacaagtagtaatgtgaaataaaattattttccaaaagtgacaagtattgtga 31061469  T
Q  98 aacgga 103  Q
    ||||||    
T  31061468 aacgga 31061463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 1749457 - 1749515
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattc 74  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  1749457 caataactaatgttgcattgaaacttaaaagtaacaagtattgtgaaacaaaattattc 1749515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1837937 - 1837827
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagta---ttgtgaaacaaaattattctctaaaatggacaagtattatga 97  Q
    |||||||||| ||  |||||||||||||||||||||||||| |||||||||||||   |  |||||||||||||||||  ||||   ||| |||||||||    
T  1837937 gtattattgataaatcaataattaatgttgcattgaaacttaaaagtgacaagtaaattattgaaacaaaattattcttcaaaa--aacatgtattatga 1837840  T
Q  98 aacggagggagta 110  Q
    |||||| ||||||    
T  1837839 aacggatggagta 1837827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25929266 - 25929368
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||  ||||| |||||||||| |||||||||||||| | |||||    ||||||||||||||||| |||||  |||||||||| ||||||    
T  25929266 gtattattgataaatcaatatttaatgttgcgttgaaacttgaaaggggcaagtgaaatgaaacaaaattattctttaaaagcgacaagtattgtgaaac 25929365  T
Q  101 gga 103  Q
    |||    
T  25929366 gga 25929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 12744576 - 12744647
Alignment:
Q  223 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| ||||||||||| ||||| ||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  12744576 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtcctt 12744647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 12755566 - 12755637
Alignment:
Q  223 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| ||||||||||| ||||| ||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  12755566 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtcctt 12755637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 14350565 - 14350510
Alignment:
Q  19 taattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattc 74  Q
    ||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||    
T  14350565 taattaatgttgcattgaaactttaaagtgacaagtaatataaaacaaaattattc 14350510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 299
Target Start/End: Original strand, 9659179 - 9659307
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||  ||||| |  ||| |  |||||||||| ||||||||||||||  |||| ||||||||    
T  9659179 ctttcgcaccggtttccaacccaccaaaggtggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttgttc-ccctgggaatcgaa 9659277  T
Q  270 tctggtattcctcggatacgtccttagaat 299  Q
     | |||||||| ||  ||||||||||||||    
T  9659278 cccggtattccccgagtacgtccttagaat 9659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 45726486 - 45726557
Alignment:
Q  223 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||| |||| |||||||| |||| ||| ||| |||||||||||||| | |||||||||||| |||||||||    
T  45726486 gtagagacatacgcactggccaaatgttattcctcctgagaatcgaaccaggtattcctcgggtacgtcctt 45726557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 3943742 - 3943804
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  3943742 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 41959788 - 41959850
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  41959788 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 51064995 - 51065037
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaatat 114  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagtaatat 51065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3657242 - 3657282
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaactt 41  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3657242 gtattattgacaaaccaataattaatgttgcattgaaactt 3657282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 5855570 - 5855506
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| || ||||||||||    
T  5855570 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtcctt 5855506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 8764099 - 8763975
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| |||||||||||||| |||||  |||||||  |||||  |||||||||||| |||  |||||||  |||| ||| ||||    
T  8764099 ctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacgaa 8764000  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||| ||| |||||||||    
T  8763999 cccgatattccccgggtacgtcctt 8763975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 16263593 - 16263529
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| |||||  ||||||| |||||||||| | |||||||||||    
T  16263593 catgcgcactggccaagcgttgttcctcctggaaatcgaacctggtattccccagatacgtcctt 16263529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 18649352 - 18649476
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||||| | || || ||||| ||  |||| ||||||||| |||||  |||||||||||||||| ||||||||  ||||| |||||||    
T  18649352 ctttcgcaccggtttccaatccactaaaggtgggcgattaatctggctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaa 18649451  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||  | |||||||||||    
T  18649452 cccgatattctccagatacgtcctt 18649476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 31734368 - 31734273
Alignment:
Q  198 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||||||  |||||||||||||| |||||  |||||||||||| ||| |||||||   ||| |||||||||||  ||||||||||| ||| |||||    
T  31734368 ggtggacgattaatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcccct-agaatcgaatccagtattcctcgggtacatcctt 31734273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 41663856 - 41663984
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||   |||| |  |||||  |||||||||||  |||  |||||||  |||| ||||||||    
T  41663856 ctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaa 41663955  T
Q  270 tctggtattcctcggatacgtccttagaa 298  Q
     | |||||||| |||||||||||||||||    
T  41663956 cccggtattccccggatacgtccttagaa 41663984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 45361942 - 45362006
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| |||||||||||||| | ||||||||  || |||||||||    
T  45361942 catgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcccagggtacgtcctt 45362006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 49078222 - 49078094
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||| ||| |||||  ||||| |  |||||  |||||||||||| |||  ||||||   |||| ||||||||    
T  49078222 ctttcgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaa 49078123  T
Q  270 tctggtattcctcggatacgtccttagaa 298  Q
     | |||||||| |||||||||||||||||    
T  49078122 cccggtattccccggatacgtccttagaa 49078094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 51437517 - 51437453
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||| ||||||||  | || |||||||| | | ||||||||||||||||||||    
T  51437517 catgcgcactggtcaagcgttgttccccatgggaatcgaacccgatattcctcggatacgtcctt 51437453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 284371 - 284330
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  284371 ttctccaaaatggacatgtattttgaaacggagggagtaata 284330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 2567373 - 2567260
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| ||||| | |||||||||||| || ||||| ||||||  |||||||||||| ||| |||||||   || || ||||||| | |||||||     
T  2567373 gtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgttttccccgaaaatcgaacccggtattct 2567274  T
Q  281 tcggatacgtcctt 294  Q
     || ||||||||||    
T  2567273 ccgaatacgtcctt 2567260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 9589615 - 9589672
Alignment:
Q  53 gtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||| ||||||||||   ||||||||||| |||| ||||| ||||||||||||||||    
T  9589615 gtattttgaaacaaaaaatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 13265954 - 13265917
Alignment:
Q  262 gaatcgaatctggtattcctcggatacgtccttagaat 299  Q
    |||||||| | |||||||||||||||||||||||||||    
T  13265954 gaatcgaaccaggtattcctcggatacgtccttagaat 13265917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 23045518 - 23045559
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  23045518 ttctccaaaatggacatgtattttgaaacggagggagtaata 23045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 34334355 - 34334424
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaat 299  Q
    |||||||||||| |||  |||||||  |||| |||||||| | |||||||| ||||||||||||| ||||    
T  34334355 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaat 34334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 16956514 - 16956450
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||||||||||||||||||||||   |||||||| ||||   |||||||| ||| |||||||||    
T  16956514 catgcgcactggtcaaacgttgttacccctgagaaccgaacacggtattccccgggtacgtcctt 16956450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 17358531 - 17358595
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||| ||||||| ||||||||  ||||||||||||| | |||||||| |  ||||||||||    
T  17358531 catgcgcattggtcaagcgttgttctccctgagaatcgaacccggtattccccaaatacgtcctt 17358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 18808313 - 18808249
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||||||| ||||||||   |||||||| ||| ||| |||||||  |||||||||||    
T  18808313 catgcgcactggtcaagcgttgttccctctgagaattgaacctgttattccttagatacgtcctt 18808249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 26325920 - 26325796
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||  |||  |||||||   ||| ||||||||    
T  26325920 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttcccgctgggaatcgaa 26325821  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | ||||||||||||||||||||    
T  26325820 cccgatattcctcggatacgtcctt 26325796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 41959116 - 41959076
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagtaat 112  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  41959116 ttctccaaaatggacatgtattttgaaacggagggagtaat 41959076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 44969712 - 44969653
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 290  Q
    ||||| |||||| ||| |||||||| |||||||||||||| |||||||| ||||| |||||    
T  44969712 catgcacactggccaagcgttgttc-tcctgagaatcgaacctggtatttctcgggtacgt 44969653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 50503421 - 50503485
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    ||||||||||||||||  |||||||  |||| |||||||| | | |||||| |||||||||||||    
T  50503421 catgcgcactggtcaagtgttgttccccctgggaatcgaacccgatattccccggatacgtcctt 50503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27813979 - 27814088
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27813979 gtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 27814078  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  27814079 ggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36453233 - 36453124
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36453233 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 36453134  T
Q  101 ggagggagta 110  Q
    |||| |||||    
T  36453133 ggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10981676 - 10981785
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  10981676 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaaatattatgaaat 10981775  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  10981776 ggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25614462 - 25614353
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25614462 gtattattgacaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaattattatgaaac 25614363  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  25614362 ggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 47110618 - 47110727
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  47110618 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatgaataagtattatgaaac 47110717  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  47110718 ggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40349130 - 40349238
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40349130 gtattattgaccaaacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaac-aaattattctctaaaatggacaagtattatgaaac 40349228  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  40349229 ggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 16662261 - 16662372
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||  ||||  |||||||||| |||||     
T  16662261 gtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaaat 16662360  T
Q  101 ggagggagtaat 112  Q
    ||||||||||||    
T  16662361 ggagggagtaat 16662372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 17636621 - 17636732
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||  ||||  |||||||||| |||||     
T  17636621 gtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaaat 17636720  T
Q  101 ggagggagtaat 112  Q
    ||||||||||||    
T  17636721 ggagggagtaat 17636732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27941093 - 27941013
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaa 81  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  27941093 gtattattgacaagccaataattaatgttgcaatgaaacttgaaagtgacaagtaatgtgaaacaaaattgttctccaaaa 27941013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3091681 - 3091755
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 75  Q
    |||||||||||||  ||||| |||||||||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  3091681 gtattattgacaaaccaatatttaatgttgcattgaaacttaaaaatgacaagtaaagtgaaacaaaattattct 3091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 16360549 - 16360653
Alignment:
Q  5 tattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 104  Q
    |||||||||  ||||| ||||||||| ||||||||||||||||||||||||  ||||| | ||||||||||| ||||  ||||| |||| |||||| ||     
T  16360549 tattgacaaaccaatatttaatgttgtattgaaacttgaaagtgacaagtaaagtgaagc-aaattattctccaaaaacgacaaatattgtgaaacagaa 16360647  T
Q  105 ggagta 110  Q
    ||||||    
T  16360648 ggagta 16360653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 23823999 - 23823931
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    |||||||||||| |||||||||||   | |||||||| |||||| ||||||||||||||||||||||||    
T  23823999 catgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaa 23823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 29151990 - 29151928
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcc 292  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||||| | |||||||    
T  29151990 catgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtattcctcaggtacgtcc 29151928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 4195212 - 4195325
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||||||| ||||| ||||||||||||||  ||||| |  |||||  |||||||||| | |||| ||||||| |||||  |||||||   ||||||||    
T  4195212 gtttccaacccaccaatggtggacggctaatccggctcatgcgtagaggcatgcgcactagccaaatgttgttcctcctggaaatcgaactcggtattcc 4195311  T
Q  281 tcggatacgtcctt 294  Q
     |||||||||||||    
T  4195312 ccggatacgtcctt 4195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 17748392 - 17748505
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| | ||| |||||||| |||||  |||||||| |||||  |||||||||||| ||| ||||||||  |||| |||||||| | ||||||||    
T  17748392 gtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattcc 17748491  T
Q  281 tcggatacgtcctt 294  Q
     || ||||||||||    
T  17748492 ccgaatacgtcctt 17748505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 24456853 - 24456800
Alignment:
Q  22 ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 75  Q
    |||||||||||||||||||||| |||||||||||  || |||||||||||||||    
T  24456853 ttaatgttgcattgaaacttgagagtgacaagtaaagttaaacaaaattattct 24456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 1797526 - 1797446
Alignment:
Q  214 ggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||  ||||| ||||||||||||| ||| |||||||   |||| |||||||| | ||||||||||||||||||||||    
T  1797526 ggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacccggtattcctcggatacgtcctt 1797446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 42210272 - 42210385
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| |||||||||||  |  ||||  |||||||  |||||  |||||||||||| |||||||||||    ||| |||||||| | ||||||||    
T  42210272 gtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagccggtattcc 42210371  T
Q  281 tcggatacgtcctt 294  Q
    ||||||||||||||    
T  42210372 tcggatacgtcctt 42210385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 365190 - 365130
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 290  Q
    ||||||||||| | || |||||||| ||||| |||||||| | ||||||||||||||||||    
T  365190 catgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcggatacgt 365130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 10047875 - 10047999
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| ||||||  |||| |  |||||  | |||||||||| |||  |||||||  |||| ||||||||    
T  10047875 ctttcgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaa 10047974  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| |||||||||||||    
T  10047975 cccggtattccccggatacgtcctt 10047999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 16802169 - 16802109
Alignment:
Q  234 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||| ||| |||||||| |||| ||||||||||| |||||||| ||| |||||||||    
T  16802169 cgcactggccaatcgttgttcctcctaagaatcgaatccggtattccccgggtacgtcctt 16802109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 48804793 - 48804669
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  | || ||||||||    
T  48804793 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaa 48804694  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| |||||||||||||    
T  48804693 cccggtattccccggatacgtcctt 48804669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 4228813 - 4228874
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||| ||||||| ||||||||||||   |||  ||||||| ||||||||||||||||||||||||    
T  4228813 catgtgcactggccaaacgttgttc---ctggaaatcgaacctggtattcctcggatacgtcctt 4228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 22974055 - 22973953
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| |||||||| ||||| |||||| |  |||||  ||||| |||||| ||| ||||||||  ||||||||||||| | |||||||| ||  ||||||    
T  22974055 accaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtattccccgagtacgtc 22973956  T
Q  292 ctt 294  Q
    |||    
T  22973955 ctt 22973953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 28200488 - 28200566
Alignment:
Q  21 attaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaa 99  Q
    ||||||| || ||| |||||| |||||||||||||  ||||||||||||| ||||  ||||  ||||| ||||||||||    
T  28200488 attaatgctgtattaaaacttaaaagtgacaagtaaagtgaaacaaaattgttcttaaaaaacgacaaatattatgaaa 28200566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 43862031 - 43862092
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    |||||||||||| ||||||||||||  |||| |||||||| | |||||||| | ||||||||    
T  43862031 catgcgcactggccaaacgttgttccccctgggaatcgaacccggtattccccagatacgtc 43862092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 46414725 - 46414660
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctta 295  Q
    |||||||| ||| ||| |||| ||| ||||||||||||||  ||||||||| ||| ||||||||||    
T  46414725 catgcgcattggccaagcgttattcatcctgagaatcgaacttggtattccacgggtacgtcctta 46414660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 25059512 - 25059456
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 104  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||    
T  25059512 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 34659314 - 34659226
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    ||||| ||||| || |||||  |||||||  |||||  |||||||||||||||| ||||||||  | ||||||||||| | ||||||||    
T  34659314 accaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcgaacccggtattcc 34659226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 38578866 - 38578990
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||||| || |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
T  38578866 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 38578965  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||| ||| |||||||||    
T  38578966 cccgatattccccgggtacgtcctt 38578990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8626650 - 8626759
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626650 gtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 8626749  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  8626750 ggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13757375 - 13757484
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13757375 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 13757474  T
Q  101 ggagggagta 110  Q
    ||| ||||||    
T  13757475 ggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1605746 - 1605855
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605746 gtattattgacaagacaataattaatgttgtattgaaatttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 1605845  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  1605846 ggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4129595 - 4129706
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4129595 gtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttctaaaatggacaagtattatgaaac 4129693  T
Q  101 ggagggagtaata 113  Q
    |||||||||||||    
T  4129694 ggagggagtaata 4129706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 15064804 - 15064695
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  15064804 gtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattatgaaacaaaattattctccaaaatggacaagtattatgaaac 15064705  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  15064704 ggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29260360 - 29260469
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29260360 gtattattgacaagacagtaattaatgttgcattgaaacttgaaaatgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaac 29260459  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  29260460 ggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7761468 - 7761577
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7761468 gtattattgacaaaataataattaatattgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 7761567  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  7761568 ggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17942611 - 17942720
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||    
T  17942611 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattataaaacaaaattattctccaaaatggacaagtattatgaaac 17942710  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  17942711 ggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8235793 - 8235895
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8235793 gtattattgataagacaataattaatattgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatagacaagtattatgaaac 8235892  T
Q  101 gga 103  Q
    |||    
T  8235893 gga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31559847 - 31559738
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  31559847 gtattattaacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtaaaataaaattattctctaaaatggagaagtattatgaaac 31559748  T
Q  101 ggagggagta 110  Q
    ||||||||||    
T  31559747 ggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30734592 - 30734481
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||| |||| |||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| || ||||||||||||||||||||||     
T  30734592 gtattattgataagataataattaatgttgcattgaaatttgaaaatgacaactattgtaaaacaaaattattttccaaaatggacaagtattatgaaaa 30734493  T
Q  101 ggagggagtaat 112  Q
    ||||| ||||||    
T  30734492 ggaggaagtaat 30734481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20398347 - 20398238
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||| ||||||  |||||||||||||||| || ||||  |||| ||||| ||||||    
T  20398347 gtattattgacaatttaataattaatgttgcattaaaacttgaaagtggcaagtaaagtgaaacaaaattattttccaaaagtgacatgtattgtgaaac 20398248  T
Q  101 ggagggagta 110  Q
    | ||||||||    
T  20398247 gaagggagta 20398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 3798284 - 3798376
Alignment:
Q  18 ataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||| |||| | |||||  ||||  ||||||||| | |||||||||    
T  3798284 ataattaatgttgcattaaaacttgaaagtgacaagtaaagtgaaacaaaactattatttaaaaacgacatatattatgaagcagagggagta 3798376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 26860932 - 26861031
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  ||||||| ||||||| |||||||| ||||| |||||||||  |||||||||| |||||||| ||||  |||| ||||| ||||||    
T  26860932 gtattattgacaaatcaataatcaatgttgtattgaaacatgaaaatgacaagtaaagtgaaacaaacttattctccaaaaatgacatgtattgtgaaac 26861031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 1814762 - 1814870
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    ||||||||||||  ||||||| |||||||||||| || || |||||||||||||  |||||| |||||||||||  ||||  |||| ||||| |||||||    
T  1814762 tattattgacaaaccaataatcaatgttgcattggaaattaaaagtgacaagtaaagtgaaataaaattattcttcaaaagtgacatgtattgtgaaacg 1814861  T
Q  102 gagggagta 110  Q
     ||| ||||    
T  1814862 aaggaagta 1814870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 12606541 - 12606421
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| |||||| |  ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||||||||||||  ||||  |||||||    
T  12606541 ctttcgcaccggtttccagctcaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttccccctggaaatcgaa 12606442  T
Q  270 tctggtattcctcggatacgt 290  Q
    ||||||||||| |||||||||    
T  12606441 tctggtattccccggatacgt 12606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 3601195 - 3601075
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  |||||||  ||| |  |||||||||||| ||| ||||||||  |||||||||||||    
T  3601195 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaa 3601096  T
Q  270 tctggtattcctcggatacgt 290  Q
     | |||||||| || ||||||    
T  3601095 accggtattccccgaatacgt 3601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 13469044 - 13468920
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||||||| ||||| ||||| || ||||| ||||||||  |||||  |||| ||||||  ||| ||||||||  |||  |||| |||    
T  13469044 ctttcgcaccggtttccaacccaccaatggtgggcgactaatctggctcgtgcgtagaggcatgtgcactgaccaatcgttgttccccctaggaattgaa 13468945  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     |||||||||| |||||||||||||    
T  13468944 cctggtattccccggatacgtcctt 13468920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 19089609 - 19089485
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| ||| |||| |||||  |||||||  |||||  ||||| |||||| |||  |||||||  |||| ||||| ||    
T  19089609 ctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaa 19089510  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     ||||||||||||||||||||||||    
T  19089509 cctggtattcctcggatacgtcctt 19089485  T

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Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 21898699 - 21898635
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||    
T  21898699 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtcctt 21898635  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 847885 - 847831
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagta 55  Q
    |||||||||||||  ||||||||||||||||||||||  |||||| |||||||||    
T  847885 gtattattgacaaagcaataattaatgttgcattgaactttgaaaatgacaagta 847831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19996384 - 19996322
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19996384 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 24120645 - 24120734
Alignment:
Q  18 ataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggga 107  Q
    ||||||| ||||||||| |||||  ||||||||||||| ||||||||| || | ||||| ||||  ||||||| || ||||| |||||||    
T  24120645 ataattagtgttgcattaaaactaaaaagtgacaagtaatgtgaaacacaaattttctccaaaaacgacaagttttttgaaatggaggga 24120734  T

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Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 34954629 - 34954742
Alignment:
Q  181 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 280  Q
    |||||| ||| | ||| |||||||| ||||| |||||| |  |||||   ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||    
T  34954629 gtttccgacccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgttccccctgagaatcgaacctggtattcc 34954728  T
Q  281 tcggatacgtcctt 294  Q
     | | |||||||||    
T  34954729 ccaggtacgtcctt 34954742  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 6606096 - 6606220
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  ||||  |||||| |||  |||||||  |||||||||||||    
T  6606096 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcgaa 6606195  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | |||||||| |||||||||||||    
T  6606196 cccggtattccccggatacgtcctt 6606220  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 13584509 - 13584573
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||||||| |||||||||||| || |  |||||||| |||||||||||||  |||||||||    
T  13584509 catgcgcactggccaaacgttgttcatcttaggaatcgaacctggtattcctcgagtacgtcctt 13584573  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  72 ttctctaaaatggacaagtattatgaaacggagggagta 110  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 33940092 - 33939994
Alignment:
Q  200 tggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    |||||| |||||  |||||||  |||||  |||||||| |||| ||   |||||| ||||||||||| || |  |||||||||||||||||||||||||    
T  33940092 tggacgactaatccggctcgtgtgtagaggcatgcgcaatggttaagtattgttcctcctgagaatcaaacccagtattcctcggatacgtccttagaa 33939994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 879350 - 879317
Alignment:
Q  4 ttattgacaagacaataattaatgttgcattgaa 37  Q
    |||||||||| |||||||||||||||||||||||    
T  879350 ttattgacaaaacaataattaatgttgcattgaa 879317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 2271330 - 2271424
Alignment:
Q  198 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 294  Q
    |||||||| |||||  |||||||  ||||| |||||||||||||  || ||||||||   |||||||||||| | |||||||| || ||||||||||    
T  2271330 ggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgttc--tctgagaatcgaacccggtattccccgaatacgtcctt 2271424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 8938822 - 8938705
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| | ||| |||||||| |||||| ||||| |  |||||  | ||||||||||||||  ||||||| ||||| ||||||||    
T  8938822 ctttcgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgttcctcctgggaatcgaa 8938723  T
Q  270 tctggtattcctcggata 287  Q
     |  ||||||| ||||||    
T  8938722 ccaagtattccccggata 8938705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 14107417 - 14107478
Alignment:
Q  230 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    |||| ||||||||||| |||||||| ||||| |||||||| | |||||||| || |||||||    
T  14107417 catgtgcactggtcaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtc 14107478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 13036003 - 13036127
Alignment:
Q  171 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 269  Q
    ||||||||||| ||||| ||| |||||  ||||||| ||||| |||||| |  |||||  |||||||||||| |||  |||||||  ||||| |||||||    
T  13036003 ctttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaa 13036102  T
Q  270 tctggtattcctcggatacgtcctt 294  Q
     | | |||||| || ||||||||||    
T  13036103 cccgatattccccgaatacgtcctt 13036127  T

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Target: scaffold1770 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 330 - 441
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  330 gtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttctaaaatggacaagtattatgaaac 428  T
Q  101 ggagggagtaata 113  Q
    |||||||||||||    
T  429 ggagggagtaata 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 45622 - 45733
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 101  Q
    ||||||||| || |||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622 tattattgataatacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 45721  T
Q  102 gagggagtaata 113  Q
    ||||||||||||    
T  45722 gagggagtaata 45733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 375 - 287
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagt 90  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  375 tattattgacaagacaataattaatgttgcattaaaatttaaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7836 - 7945
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||||  ||||||||||| |||||  |||||||||| ||||||    
T  7836 gtattattgacaaaccgataattaatgttgcattaaaacttgaaagtgacaagtaatgtgaattaaaattattctttaaaaacgacaagtattgtgaaac 7935  T
Q  101 ggagggagta 110  Q
     || ||||||    
T  7936 agatggagta 7945  T

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Target: scaffold0343 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 7009 - 6911
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    |||||||||||| | |||||||||||||||||||||||||| |||  ||||| || | |||||||||||||||||| ||||  |||||||||| ||||||    
T  7009 gtattattgacacgtcaataattaatgttgcattgaaactt-aaacggacaaataatatgaaacaaaattattctccaaaaacgacaagtattgtgaaac 6911  T

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Target: scaffold0025 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 65274 - 65199
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 76  Q
    |||||||||||||  ||||||||||| ||||||||||| || ||||||||||||| | ||||||||||||||||||    
T  65274 gtattattgacaaaccaataattaatattgcattgaaatttaaaagtgacaagtaatatgaaacaaaattattctc 65199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 71266 - 71350
Alignment:
Q  16 caataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 100  Q
    ||||||||||| ||||||| |||||| ||||||||||||| ||||||| |||||||||||  ||||  |||||||||| ||||||    
T  71266 caataattaattttgcattcaaacttaaaagtgacaagtaatgtgaaataaaattattcttcaaaaacgacaagtattgtgaaac 71350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15432 - 15351
Alignment:
Q  1 gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaat 82  Q
    |||||||||||||  | |||||||||||||||||||||||| ||||| ||| |||  ||||||||| ||| ||| |||||||    
T  15432 gtattattgacaaaccgataattaatgttgcattgaaacttaaaagttacatgtaaagtgaaacaatattgttcactaaaat 15351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 1110 - 1184
Alignment:
Q  2 tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 76  Q
    ||||||||| ||  |||||||||||||||||| ||||||| ||| |||||||||   | ||||||||||||||||    
T  1110 tattattgataaaccaataattaatgttgcatcgaaacttaaaaatgacaagtaaaataaaacaaaattattctc 1184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 9933 - 9831
Alignment:
Q  192 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| |||||||| |||||  |||||||  |||||  |||||||||||| ||| ||||||||  ||||  ||||||||| |||||||||| ||||| ||    
T  9933 accaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatacatc 9834  T
Q  292 ctt 294  Q
    |||    
T  9833 ctt 9831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 23851 - 23916
Alignment:
Q  48 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 113  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||| |||||||||    
T  23851 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggagtaata 23916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 2143 - 2210
Alignment:
Q  224 tagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 291  Q
    ||||| ||||||| ||  |||| |||||||| | |||||||||||||| |||||| ||||||||||||    
T  2143 tagaagcatgcgcgctaatcaagcgttgttccttctgagaatcgaatccggtatttctcggatacgtc 2210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 249369 - 249432
Alignment:
Q  235 gcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 298  Q
    ||||||||||| |||| |||  ||||||||||||| |||||||||| |  ||||||||||||||    
T  249369 gcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaa 249432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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