View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20086_low_2 (Length: 299)
Name: NF20086_low_2
Description: NF20086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20086_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 26359748 - 26359489
Alignment:
| Q |
2 |
ggatgtcgaagaatatgagaggtaaacatttaaggatgtggatgaattctagagaaaaattcacaaagggaaatttttcccttcattactataattttgc |
101 |
Q |
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| T |
26359748 |
ggatgtggatgaataggagaggtaaacatttaaggatgtggatgaattctagagaaaaattcacaaagggaaattcatcccttcattactataattttga |
26359649 |
T |
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| Q |
102 |
aataaataaaggataataatgcacacatttataaaatagatgaaattaattgaataattacactcaaaaacaatagtgatagagttgtatatttattata |
201 |
Q |
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| T |
26359648 |
aataaataaaggataataatgcacacatttataaaatagatgaaattaattgaataattacactcaaaaacaatagtgatagagttgtttatttatttta |
26359549 |
T |
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| Q |
202 |
aaaactcatggacctcgagctggccccataccatttaaagaaaatgtttgataaaatatt |
261 |
Q |
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| T |
26359548 |
aaaactcctggacctcgagctggccccataccatttaaagaaaatgtttggtaaaatatt |
26359489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 26359846 - 26359754
Alignment:
| Q |
28 |
catttaaggatgtggatgaattctagagaaaaattcacaaagggaaatttttcccttcattactataattttgcaataaataaaggataataa |
120 |
Q |
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| T |
26359846 |
catttaaggatgtggatgaattctagagaaaaattcacaaaggaaaattcatcccttcattactataattttgaaataaataaaggataataa |
26359754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 40988943 - 40988887
Alignment:
| Q |
82 |
cttcattactataattttgcaataaataaaggataataatgcacacatttataaaat |
138 |
Q |
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| T |
40988943 |
cttcattactataattttcaaataaataaataatataaatgcacacatttctaaaat |
40988887 |
T |
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