View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20087_high_1 (Length: 437)
Name: NF20087_high_1
Description: NF20087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20087_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 8053254 - 8052851
Alignment:
| Q |
10 |
ataatactgcaatatcatatcagtgttttcgtgtagaaaaatatgacgattctttgagcttaagatgcaaaaactgattgtctaattgctcgttctagca |
109 |
Q |
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| T |
8053254 |
ataatactgcaatatcatatcagtgttttcgtgtagaaaaatatgacgattctttgagcttaagatgcaaaaactgattgtctaattgctcgttctagca |
8053155 |
T |
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| Q |
110 |
gagaggtaatgaccactgaaatttttactgttgatacttgataagactagtcttttacttgttggaatatgttattctactgataagaggatttgttcag |
209 |
Q |
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| T |
8053154 |
gagaggtaatgaccactgaaatttttactgttgatacttgataagactagtcttttacttgttggaatatgttattctactgataagaggatttgttcag |
8053055 |
T |
|
| Q |
210 |
gtctaatggtaggtgagacggaaacctcttcgcacgcatacctcgatacagatgataatttgataaaataacataatttaatagttatatttgttaatgt |
309 |
Q |
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| T |
8053054 |
gcctaatggtaggtgaggcagcaagctcttcgcacgcatacctcgatacagataataatttgataaaataacataatttaatagttatatttgttgatgt |
8052955 |
T |
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| Q |
310 |
tggacacgatacatatcaacatcaacatcaggacacacctaatcactccataactggttagtataattttcttttttataattcataaaaaatatgctat |
409 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8052954 |
cggacacgatacatatcaacatcga------gacacacctaatcactccataactggttagtataattttcttttttataattcataaaaaatatgctat |
8052861 |
T |
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| Q |
410 |
catgtatact |
419 |
Q |
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| T |
8052860 |
catgtatact |
8052851 |
T |
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