View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20087_high_4 (Length: 348)

Name: NF20087_high_4
Description: NF20087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20087_high_4
NF20087_high_4
[»] chr8 (7 HSPs)
chr8 (49-333)||(33180167-33180451)
chr8 (1-63)||(33180481-33180543)
chr8 (8-151)||(36257427-36257567)
chr8 (289-331)||(15938633-15938675)
chr8 (264-322)||(8995415-8995473)
chr8 (136-235)||(19189462-19189562)
chr8 (8-40)||(36257643-36257675)
[»] chr2 (11 HSPs)
chr2 (8-239)||(11482644-11482869)
chr2 (9-171)||(17354479-17354640)
chr2 (285-331)||(17525700-17525745)
chr2 (263-333)||(29141572-29141641)
chr2 (1-49)||(9467740-9467788)
chr2 (8-82)||(27640802-27640874)
chr2 (4-46)||(29141850-29141892)
chr2 (16-82)||(32100145-32100211)
chr2 (192-237)||(31643342-31643387)
chr2 (298-334)||(31404550-31404586)
chr2 (285-333)||(31643231-31643278)
[»] scaffold0028 (2 HSPs)
scaffold0028 (195-333)||(33443-33581)
scaffold0028 (4-52)||(33692-33740)
[»] scaffold0003 (1 HSPs)
scaffold0003 (147-322)||(303420-303590)
[»] chr6 (4 HSPs)
chr6 (4-84)||(13405244-13405324)
chr6 (293-333)||(2064523-2064563)
chr6 (282-330)||(8037857-8037905)
chr6 (285-333)||(7524333-7524381)
[»] chr3 (6 HSPs)
chr3 (8-115)||(25807159-25807264)
chr3 (260-322)||(34661196-34661258)
chr3 (280-330)||(7249409-7249459)
chr3 (261-322)||(18658499-18658560)
chr3 (298-334)||(41575697-41575733)
chr3 (265-333)||(53687569-53687637)
[»] chr7 (10 HSPs)
chr7 (128-239)||(38570016-38570127)
chr7 (101-239)||(6428832-6428972)
chr7 (263-333)||(7362228-7362298)
chr7 (203-332)||(14629289-14629419)
chr7 (285-322)||(4248526-4248563)
chr7 (261-333)||(7373147-7373219)
chr7 (286-329)||(5908652-5908695)
chr7 (9-82)||(28755007-28755080)
chr7 (285-333)||(16649238-16649285)
chr7 (285-333)||(17623599-17623646)
[»] chr5 (9 HSPs)
chr5 (1-181)||(6228739-6228916)
chr5 (263-325)||(25396956-25397018)
chr5 (91-333)||(38705196-38705437)
chr5 (94-181)||(26682884-26682968)
chr5 (259-333)||(19576824-19576897)
chr5 (4-82)||(20117673-20117751)
chr5 (187-237)||(22578665-22578715)
chr5 (285-333)||(2616380-2616428)
chr5 (129-181)||(30062502-30062554)
[»] chr4 (7 HSPs)
chr4 (17-68)||(41998999-41999050)
chr4 (261-322)||(5734718-5734779)
chr4 (185-234)||(9045830-9045879)
chr4 (128-239)||(15632450-15632562)
chr4 (285-333)||(9045738-9045785)
chr4 (153-181)||(41998904-41998932)
chr4 (285-333)||(43226522-43226570)
[»] chr1 (6 HSPs)
chr1 (8-79)||(27324749-27324820)
chr1 (291-333)||(8751579-8751621)
chr1 (263-333)||(32540224-32540293)
chr1 (4-82)||(43532238-43532316)
chr1 (285-330)||(12882480-12882525)
chr1 (8-109)||(43060117-43060218)
[»] scaffold0778 (1 HSPs)
scaffold0778 (128-237)||(1124-1234)
[»] scaffold0008 (1 HSPs)
scaffold0008 (94-237)||(36093-36234)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 49 - 333
Target Start/End: Complemental strand, 33180451 - 33180167
Alignment:
Q  49 aaaaaggacatgcatgatttttgtcatgcttatattaggttgtgattagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33180451 aaaaaggacatgcatgatttttgtcatgcttatattaggttgtgattagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttat 33180352  T
Q  149 attatcatgtcaactgaaaattccttcaattaattgtgtactatacaaaaatagtttcataatttataacagtggtaaaatatgtaattcannnnnnnna 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  33180351 attatcatgtcaactgaaaattccttcaattaattgtgtactatacaaaaatagtttcataatttataacagtggtaaaatatgtaattcatttttttca 33180252  T
Q  249 agtacccacgcaaactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  33180251 agtacccacccaaactttttcgtcaaactctgtcacttcaacttcgtgcttgatgcttattacaactttaattttgtgtttatat 33180167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33180543 - 33180481
Alignment:
Q  1 tgtgagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcat 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33180543 tgtgagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcat 33180481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 36257567 - 36257427
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatga-tttttgtcatgcttata-ttaggttgtgattagcggaggtt 105  Q
    |||||| ||||||||||||| |||||||||||| | |||||||||| ||||| | ||| ||||||||||  ||||| ||||    ||| |||| ||||||    
T  36257567 ttttaaacaatttttcaacagttttagttttcgacagttctaaaaatgacatacgtgattttttgtcatatttatacttag---ctgagtagcagaggtt 36257471  T
Q  106 tacaaaccttcttctatttgtgggggttttaaacctcctttatatt 151  Q
    ||||||||||||   ||||||||||| ||| || |||| |||||||    
T  36257470 tacaaaccttct--aatttgtggggggtttcaaactcccttatatt 36257427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 15938633 - 15938675
Alignment:
Q  289 acttcgtgcttaatgcttattataactttaattttgtgtttat 331  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  15938633 actttgtgcttaatgcttattacaactttaattttgtgtttat 15938675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 8995415 - 8995473
Alignment:
Q  264 tttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattt 322  Q
    ||||| ||||| ||| |||| |||||||||||| |||||| |||||| |||||||||||    
T  8995415 tttttagtcaaactccatcatttcaacttcgtgtttaatgtttattacaactttaattt 8995473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 19189462 - 19189562
Alignment:
Q  136 aaacctcctttatattatcatgtcaactgaaaattccttcaattaattgt-gtactatacaaaaatagtttcataatttataacagtggtaaaatatgta 234  Q
    ||||||||  |||||| ||||||||||||||||||||   ||||||  || |||||||| | ||| |||||||||| |||||  ||| |||||| |||||    
T  19189462 aaacctcccgtatattgtcatgtcaactgaaaattcccataattaacagtagtactataaataaacagtttcataaattatagtagtcgtaaaaaatgta 19189561  T
Q  235 a 235  Q
    |    
T  19189562 a 19189562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 36257675 - 36257643
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcg 40  Q
    |||||| ||||||||||||||||||||||||||    
T  36257675 ttttaaacaatttttcaacaattttagttttcg 36257643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 11482869 - 11482644
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttatattaggttgtgattagcggaggttta 107  Q
    |||||| |||||||||||   |||  ||||||| |||||||||||   |||||  |||||||||||||||||||| | | ||  |  |||||||||||||    
T  11482869 ttttaaacaatttttcaatggtttaggttttcgacggttctaaaagtaacatg--tgatttttgtcatgcttatacttgttttgg--tagcggaggttta 11482774  T
Q  108 caaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattg-tgtactatacaaaaatagtttc 206  Q
    || |||||||   |||| | ||| ||| ||| |||||||||||| || |||||| |||||||||||||||||||  | |||| || ||||||| || |||    
T  11482773 cataccttcta--atttttcgggttttcaaatctcctttatattgtcttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaa-agattc 11482677  T
Q  207 ataatttataacagtggtaaaatatgtaattca 239  Q
     ||||||||| |||| ||||| |||||||||||    
T  11482676 gtaatttataccagtagtaaactatgtaattca 11482644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 17354640 - 17354479
Alignment:
Q  9 tttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttatattaggttg--tgattagcggaggttt 106  Q
    ||||| ||||||||||||  |||  |||||||||||||||||||  |||||   |||| ||| | ||||||||||| || ||  |  ||||| |||||||    
T  17354640 tttaaacaatttttcaactgtttaggttttcggcggttctaaaattgacatatgtgatcttttt-atgcttatatttggctggttagttagctgaggttt 17354542  T
Q  107 acaaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattc 171  Q
    |||||||||||   |||| ||||||||| ||| ||| |||||||| || ||||||||||||||||    
T  17354541 acaaaccttcta--atttttgggggtttcaaatctcttttatattgtcttgtcaactgaaaattc 17354479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 17525745 - 17525700
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttat 331  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||    
T  17525745 ttcaacttcgtgcttaatgcttattacaactttaa-tttgtgtttat 17525700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 29141641 - 29141572
Alignment:
Q  263 ctttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||| ||||| ||| |||| ||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  29141641 ctttttagtcaaactccatcatttcaacttcgtgcttaatgtttattacgactttaa-tttgtgtttatat 29141572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9467740 - 9467788
Alignment:
Q  1 tgtgagattttaatcaatttttcaacaattttagttttcggcggttcta 49  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  9467740 tgtgagattttaaacaatttttcaacagttttaaatttcggcggttcta 9467788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 27640802 - 27640874
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttata 82  Q
    |||||| |||||||||||   ||| |||||| |||||||||||||  ||||||  ||||||||||||||||||||    
T  27640802 ttttaaacaatttttcaatggtttgagtttttggcggttctaaaagtgacatg--tgatttttgtcatgcttata 27640874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 29141892 - 29141850
Alignment:
Q  4 gagattttaatcaatttttcaacaattttagttttcggcggtt 46  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||    
T  29141892 gagactttaaacaatttttcaacaattttaattttcggcggtt 29141850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32100145 - 32100211
Alignment:
Q  16 aatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttata 82  Q
    ||||||||||||||| |||||||| | ||||  |||| || ||| |||||||||||| |||||||||    
T  32100145 aatttttcaacaattatagttttctgtggtttcaaaaggggcatacatgatttttgtgatgcttata 32100211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 31643387 - 31643342
Alignment:
Q  192 tacaaaaatagtttcataatttataacagtggtaaaatatgtaatt 237  Q
    |||||||| ||||||||||||||||| ||| || ||||||||||||    
T  31643387 tacaaaaaaagtttcataatttataatagttgttaaatatgtaatt 31643342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 31404550 - 31404586
Alignment:
Q  298 ttaatgcttattataactttaattttgtgtttatatt 334  Q
    ||||||||||||||||| | |||||||||||||||||    
T  31404550 ttaatgcttattataacataaattttgtgtttatatt 31404586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 31643278 - 31643231
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  31643278 ttcaacttcgtatttaatgcttattacaactttaa-tttgtgtttatat 31643231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 333
Target Start/End: Complemental strand, 33581 - 33443
Alignment:
Q  195 aaaaatagtttcataatttataacagtggtaaaatatgtaattcannnnnnnnaagtacccacgcaaactttttcgtcaagctctatcacttcaacttcg 294  Q
    ||||| |||||||||||||||| |||| ||||||||||||| |||        ||||| || | | | |||||| ||||| |||   ||||||||||| |    
T  33581 aaaaacagtttcataatttatagcagtagtaaaatatgtaaatcatttttataaagtatccgcccgagctttttagtcaaactccgacacttcaactttg 33482  T
Q  295 tgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||||||||||||| |||||||||||| |||| ||||    
T  33481 tgcttaatgcttattacaactttaattttatgttaatat 33443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 33740 - 33692
Alignment:
Q  4 gagattttaatcaatttttcaacaattttagttttcggcggttctaaaa 52  Q
    |||||||||| ||||||||||||  |||||||||||| | |||||||||    
T  33740 gagattttaaacaatttttcaacggttttagttttcgccagttctaaaa 33692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 322
Target Start/End: Complemental strand, 303590 - 303420
Alignment:
Q  147 atattatcatgtcaactgaaaattccttcaattaattgt-gtactatacaaaaatagtttcataatttataacagtggtaaaatatgtaattcannnnnn 245  Q
    ||||| || ||||||||||||||||  ||||||||  || ||||| |||||||| || |||||||||||||  ||| |||||||||||||||            
T  303590 atattgtcttgtcaactgaaaattctctcaattaacagttgtactgtacaaaaaaagattcataatttatagtagttgtaaaatatgtaatt------at 303497  T
Q  246 nnaagtacccacgcaaactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattt 322  Q
      ||||| |||| | |||||||| ||||| ||| |||| |||||||| ||| ||||| ||||||| |||||||||||    
T  303496 ttaagtatccaccctaactttttagtcaaactccatcatttcaactttgtgtttaatacttattacaactttaattt 303420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 13405324 - 13405244
Alignment:
Q  4 gagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttatatt 84  Q
    |||||||||| ||||||||||||| ||||| |||||||||||| |||||  ||||| | |||||||||| |||| ||||||    
T  13405324 gagattttaaacaatttttcaacagttttaattttcggcggttttaaaagtgacatacgtgatttttgtgatgcatatatt 13405244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 2064563 - 2064523
Alignment:
Q  293 cgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  2064563 cgtgtttaatgcttattataactttaattttgtgtttatat 2064523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 8037857 - 8037905
Alignment:
Q  282 cacttcaacttcgtgcttaatgcttattataactttaattttgtgttta 330  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||||    
T  8037857 cacttcaacttcatgattaatgcttattacaactttaattttgtgttta 8037905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 7524333 - 7524381
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||||    
T  7524333 ttcaacttcgtgcataatgattattacaactttaatttagtgtttatat 7524381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 25807159 - 25807264
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttatattaggttgtgattagcggaggttta 107  Q
    |||||| |||||||||||   |||  |||||||||||||||||||  |||||   |||||||||||||||||||||| ||||| |  |||||||||||||    
T  25807159 ttttaaacaatttttcaatggtttgggttttcggcggttctaaaagtgacatatgtgatttttgtcatgcttatatttggttggg--tagcggaggttta 25807256  T
Q  108 caaacctt 115  Q
    || |||||    
T  25807257 catacctt 25807264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 34661196 - 34661258
Alignment:
Q  260 aaactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattt 322  Q
    ||||||||| ||||| |||| ||| ||||||||||| ||||||| |||||| |||||||||||    
T  34661196 aaactttttagtcaaactctgtcatttcaacttcgtacttaatgtttattacaactttaattt 34661258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 7249409 - 7249459
Alignment:
Q  280 atcacttcaacttcgtgcttaatgcttattataactttaattttgtgttta 330  Q
    ||||||||||||||  |||||||  |||||| |||||||||||||||||||    
T  7249409 atcacttcaacttcacgcttaatatttattacaactttaattttgtgttta 7249459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 18658499 - 18658560
Alignment:
Q  261 aactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattt 322  Q
    |||||||| ||||| |||  ||| ||||||||||| |||||| ||||||| |||||||||||    
T  18658499 aactttttagtcaaactccgtcatttcaacttcgtacttaatacttattacaactttaattt 18658560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 41575733 - 41575697
Alignment:
Q  298 ttaatgcttattataactttaattttgtgtttatatt 334  Q
    ||||||||||||||||| | |||||||||||||||||    
T  41575733 ttaatgcttattataacataaattttgtgtttatatt 41575697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 53687637 - 53687569
Alignment:
Q  265 ttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||| ||||| ||| ||||||  ||||| ||| ||||||||||||| ||||| |||||| |||||||||    
T  53687637 ttttagtcaaactccatcactaaaacttggtgtttaatgcttattacaacttaaattttatgtttatat 53687569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 38570127 - 38570016
Alignment:
Q  128 ggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattgtgtactatacaaaaatagtttcataatttataacagtggtaaa 227  Q
    ||||||| |||||||||||||||| || |||||||| |||||  ||||||||||   ||||||||| ||||| | ||||| |||| |||  ||| |||||    
T  38570127 ggggtttcaaacctcctttatattgtcttgtcaactaaaaatctcttcaattaaaattgtactataaaaaaagaatttcaaaattcatagtagtagtaaa 38570028  T
Q  228 atatgtaattca 239  Q
    |||||| |||||    
T  38570027 atatgtcattca 38570016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 6428972 - 6428832
Alignment:
Q  101 aggtttacaaaccttcttctatttgtgggggttt-taaacctcctttatattatcatgtcaactga-aaattccttcaattaattgt-gtactatacaaa 197  Q
    |||||||||||||||||   |||||| ||||||| ||||||| |||||||| ||| |||||||| | |||||||   ||||||| || |||||||| |||    
T  6428972 aggtttacaaaccttcta--atttgtaggggtttctaaaccttctttatataatcttgtcaactaataaattcccctaattaatagttgtactataaaaa 6428875  T
Q  198 aat-agtttcataatttataacagtggtaaaatatgtaattca 239  Q
    ||  |||||| ||||||||| || | |||||||||||||||||    
T  6428874 aaacagtttcgtaatttatagcatttgtaaaatatgtaattca 6428832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 7362298 - 7362228
Alignment:
Q  263 ctttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||| ||| | |||| ||||||||| || ||| ||||||||||||| || |||||||||||||||||||    
T  7362298 ctttttagtccaactctgtcacttcaattttgtgtttaatgcttattacaattttaattttgtgtttatat 7362228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 14629419 - 14629289
Alignment:
Q  203 tttcataatttataacagtggtaaaa-tatgtaattcannnnnnnnaagtacccacgcaaactttttcgtcaagctctatcacttcaacttcgtgcttaa 301  Q
    |||||||||||||| |||| |||||| |||||||||||        ||||| |||  | ||| |||| ||||| ||||| |||||||||||| |||||||    
T  14629419 tttcataatttatagcagtagtaaaaatatgtaattcattttcttaaagtatccatccgaacattttagtcaaactctaccacttcaacttcatgcttaa 14629320  T
Q  302 tgcttattataactttaattttgtgtttata 332  Q
    |  |||||| || |||| |||||||||||||    
T  14629319 tatttattacaattttagttttgtgtttata 14629289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 4248563 - 4248526
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattt 322  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4248563 ttcaacttcgtgtttaatgcttattataactttaattt 4248526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 7373219 - 7373147
Alignment:
Q  261 aactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||||| ||||| |||| | ||||||||||| | ||||||| || ||| || |||||||||||||||||||    
T  7373219 aactttttagtcaaactctctaacttcaacttcatacttaatgtttgttacaaatttaattttgtgtttatat 7373147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 5908652 - 5908695
Alignment:
Q  286 tcaacttcgtgcttaatgcttattataactttaattttgtgttt 329  Q
    |||||||  ||||||||| |||||||||||||||||||||||||    
T  5908652 tcaactttatgcttaatgtttattataactttaattttgtgttt 5908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 28755007 - 28755080
Alignment:
Q  9 tttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttata 82  Q
    ||||| |||||||||||| ||| ||||||||  |||||  |||| || ||| |||||||||||| |||||||||    
T  28755007 tttaaacaatttttcaacgattatagttttctacggtttcaaaaggggcatacatgatttttgtgatgcttata 28755080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 16649285 - 16649238
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  16649285 ttcaacttcgtacttaatgtttattacaactttaa-tttgtgtttatat 16649238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 17623646 - 17623599
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  17623646 ttcaacttcgtacttaatgtttattacaactttaa-tttgtgtttatat 17623599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6228916 - 6228739
Alignment:
Q  1 tgtgagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttatattaggttg--tgattagc 98  Q
    |||||| |||||| || ||||||||||||||  |||||||||| ||| ||||  |||||    ||||||| |||||| |||| |   |||  || ||| |    
T  6228916 tgtgaggttttaaacattttttcaacaatttaggttttcggcgattccaaaagtgacatatgcgatttttttcatgcatatact---ttgactggttaac 6228820  T
Q  99 ggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaa 181  Q
    ||||||||||  |||||||   |||| ||||||||| ||||||| ||||||||||| |||||||||||||||||  |||||||    
T  6228819 ggaggtttaccgaccttcta--atttttgggggtttcaaacctcgtttatattatcttgtcaactgaaaattcccccaattaa 6228739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 25397018 - 25396956
Alignment:
Q  263 ctttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgt 325  Q
    |||||| |||||  ||| ||| ||||||||||| ||||||| |||||||||||||||||||||    
T  25397018 ctttttagtcaaaatctttcaattcaacttcgttcttaatgtttattataactttaattttgt 25396956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 333
Target Start/End: Complemental strand, 38705437 - 38705196
Alignment:
Q  91 tgattagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattgtg-tac 189  Q
    ||||||| ||||||||||| |||||||   ||||   ||||||| |||||||  ||||||||| ||| ||||||||| ||| | |||||||  ||  ||     
T  38705437 tgattagtggaggtttacagaccttcta--atttaccggggtttcaaacctctcttatattatgatgccaactgaaagttcttccaattaacagttctat 38705340  T
Q  190 tatacaaaaat-agtttcataatttataacagtggtaaaatatgtaattcannnnnnnnaagtacccacgcaaactttttcgtcaagctctatcacttca 288  Q
    |||| |||||  |||||||||||||||| | || |||||||||||||||||        |||||| | | | | |||||| |||||  | | || |||||    
T  38705339 tatagaaaaaacagtttcataatttatagcggtagtaaaatatgtaattcattcttttaaagtactctcccgagctttttggtcaaattttgtctcttca 38705240  T
Q  289 acttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||| |||  |||||||||||| || |||||||||||||||||||    
T  38705239 actttgtgtgtaatgcttattacaa-tttaattttgtgtttatat 38705196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 26682968 - 26682884
Alignment:
Q  94 ttagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaa 181  Q
    |||||||||| ||||| |||||||   |||||||||||||| |||||||||||||||| | |||| |||| ||||||  |||||||||    
T  26682968 ttagcggaggattacataccttcta--atttgtgggggtttcaaacctcctttatattgt-atgttaactaaaaattgtttcaattaa 26682884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 19576897 - 19576824
Alignment:
Q  259 caaactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||||||| |||||  ||| ||| ||||||||||| ||| |||| ||||| |||||||| |||||||||||||    
T  19576897 caaactttttagtcaaattctgtcatttcaacttcgtactttatgcgtattacaactttaa-tttgtgtttatat 19576824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 20117673 - 20117751
Alignment:
Q  4 gagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttata 82  Q
    |||| ||||| ||| |||||||| |||||||||||||||||||  ||||  | ||| | |||||||||| |||||||||    
T  20117673 gagactttaaacaacttttcaacgattttagttttcggcggtttcaaaagtggcatacgtgatttttgtgatgcttata 20117751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 22578715 - 22578665
Alignment:
Q  187 tactatacaaaaatagtttcataatttataacagtggtaaaatatgtaatt 237  Q
    |||| |||||||| ||||||||||||||||  ||| |||||||||||||||    
T  22578715 tactgtacaaaaaaagtttcataatttatagtagttgtaaaatatgtaatt 22578665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 2616380 - 2616428
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||||||||||||||| || |||| || ||||||||| |||||||||    
T  2616380 ttcaacttcgtgcttaattctgattacaaatttaattttttgtttatat 2616428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 30062554 - 30062502
Alignment:
Q  129 gggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaa 181  Q
    |||||| ||| ||||  |||||| ||||||||||||||||||| |||||||||    
T  30062554 gggtttcaaatctcccgtatattgtcatgtcaactgaaaattctttcaattaa 30062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 41999050 - 41998999
Alignment:
Q  17 atttttcaacaattttagttttcggcggttctaaaaaggacatgcatgattt 68  Q
    |||||||||| ||||||||||| |||||||||||| | ||||||||||||||    
T  41999050 atttttcaacgattttagtttttggcggttctaaatatgacatgcatgattt 41998999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 5734718 - 5734779
Alignment:
Q  261 aactttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattt 322  Q
    |||||||| ||||| |||  ||| ||||||||||| |||||| ||||||| |||||||||||    
T  5734718 aactttttagtcaaactccgtcatttcaacttcgtacttaatacttattacaactttaattt 5734779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 9045879 - 9045830
Alignment:
Q  185 tgtactatacaaaaatagtttcataatttataacagtggtaaaatatgta 234  Q
    |||||| |||||||| ||||||||||||||||  ||| ||||||||||||    
T  9045879 tgtactctacaaaaaaagtttcataatttatagtagttgtaaaatatgta 9045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 15632450 - 15632562
Alignment:
Q  128 ggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattgt-gtactatacaa-aaatagtttcataatttataacagtggta 225  Q
    ||||||| |||||||| | ||||| |||||| |||||||| ||||  | |||||| || ||||||||||| |||| |||||||||||||||  | |  ||    
T  15632450 ggggtttcaaacctccctaatattgtcatgttaactgaaa-ttcccccgattaatagttgtactatacaataaatggtttcataatttatattaatacta 15632548  T
Q  226 aaatatgtaattca 239  Q
    ||||||||||||||    
T  15632549 aaatatgtaattca 15632562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 9045785 - 9045738
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||| ||||||||| |||||| |||||||| |||||||||||||    
T  9045785 ttcaacttcttgcttaatgtttattacaactttaa-tttgtgtttatat 9045738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 41998932 - 41998904
Alignment:
Q  153 tcatgtcaactgaaaattccttcaattaa 181  Q
    |||||||||||||||||||||||||||||    
T  41998932 tcatgtcaactgaaaattccttcaattaa 41998904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 43226522 - 43226570
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||| |||||||||||| |||  ||||||||||| |||||||||    
T  43226522 ttcaacttcatgcttaatgctttttactactttaattttatgtttatat 43226570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 27324749 - 27324820
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgctt 79  Q
    |||||| ||||||||||||  |||   ||||||||||||||||||| |||||   |||||||||||||||||    
T  27324749 ttttaaacaatttttcaacggtttggattttcggcggttctaaaaatgacatatgtgatttttgtcatgctt 27324820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 8751621 - 8751579
Alignment:
Q  291 ttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    ||||||||||||  |||||| ||||||||||||||||||||||    
T  8751621 ttcgtgcttaatatttattacaactttaattttgtgtttatat 8751579  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 32540293 - 32540224
Alignment:
Q  263 ctttttcgtcaagctctatcacttcaacttcgtgcttaatgcttattataactttaattttgtgtttatat 333  Q
    |||||| ||||| ||| |||  |||||||||||| |||||||||||||  ||||||| |||||||||||||    
T  32540293 ctttttagtcaaactccatcgtttcaacttcgtgtttaatgcttattacgactttaa-tttgtgtttatat 32540224  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 43532316 - 43532238
Alignment:
Q  4 gagattttaatcaatttttcaacaattttagttttcggcggttctaaaaaggacatgcatgatttttgtcatgcttata 82  Q
    ||||||||||  ||||||||||||||||||||||| | | |||| | ||  | ||| |||| |||||||||||||||||    
T  43532316 gagattttaaataatttttcaacaattttagtttttgccagttccagaagtggcatacatggtttttgtcatgcttata 43532238  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 12882525 - 12882480
Alignment:
Q  285 ttcaacttcgtgcttaatgcttattataactttaattttgtgttta 330  Q
    ||||||||| ||||||||||||||||  ||||||||||| ||||||    
T  12882525 ttcaacttcatgcttaatgcttattactactttaattttatgttta 12882480  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 43060218 - 43060117
Alignment:
Q  8 ttttaatcaatttttcaacaattttagttttcggcggttctaaaaa--ggacatgcatgatttttgtcatgcttatattaggttgtgattagcggaggtt 105  Q
    |||||| ||||||||||||  |||  |||||| ||||||||| |||  ||||||   |||||||||||||||||||| | ||||| |  |||||||||||    
T  43060218 ttttaaacaatttttcaacggtttgggttttcagcggttctataaaatggacatatgtgatttttgtcatgcttatacttggttggg--tagcggaggtt 43060121  T
Q  106 taca 109  Q
    ||||    
T  43060120 taca 43060117  T

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Target: scaffold0778 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 1234 - 1124
Alignment:
Q  128 ggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattg-tgtactatacaaaaatagtttcataatttataacagtggtaa 226  Q
    ||||||| ||| |||||||||| |||| |||||| ||||||||||| || ||||  | ||||||||| ||||| || ||| ||||||| |  ||| ||||    
T  1234 ggggtttcaaatctcctttatactatcctgtcaattgaaaattcctccacttaagagttgtactataaaaaaaaagattcgtaatttaaagtagttgtaa 1135  T
Q  227 aatatgtaatt 237  Q
    | |||||||||    
T  1134 actatgtaatt 1124  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 36093 - 36234
Alignment:
Q  94 ttagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaattg-tgtactat 192  Q
    |||| |||||||||||||||||||   || | ||||||||| ||| ||| |||||||| || |||||| |||||||||   |||||||  | |||| |||    
T  36093 ttagtggaggtttacaaaccttct--aatctttgggggtttcaaatctcttttatattgtcttgtcaattgaaaattctcccaattaagagttgtattat 36190  T
Q  193 acaaaaatagtttcataatttataacagtggtaaaatatgtaatt 237  Q
    | ||||| || ||||||||||||| || | ||||| |||||||||    
T  36191 a-aaaaaaagattcataatttatatcattagtaaactatgtaatt 36234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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