View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20087_low_2 (Length: 435)
Name: NF20087_low_2
Description: NF20087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20087_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 30154047 - 30153745
Alignment:
| Q |
18 |
ataacctttgcttttacctcattaattatgtatcttttgagtgattgaatagcgtagttcacaaatttaagcatcagatatgaaatttaatctcaaaatg |
117 |
Q |
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| T |
30154047 |
ataacctttgcttttacctcattaattatgtatcttttgagtgattgaatagcgtagttcacaaatttaagcatcagatatgacatttaatctcaaaatg |
30153948 |
T |
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| Q |
118 |
cccaccatgacacttatatgattgagttaatgataggaaccaaatagtgattgaaatgcaaatggaattaaaacaatgtgaataattcttatgttaatgt |
217 |
Q |
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| T |
30153947 |
cccaccatgacacttatacgattgagttaatgataggaaccaaatagttattgaaatgcaaatggaattaaaacaatgtgaataattcttatgttaatgt |
30153848 |
T |
|
| Q |
218 |
ctaatagaagaattgcagaaaaattaattacaaacatgcatgtcatacatgttgtcttaccatgacataattgtggaagtggaagtgtaaaataattttg |
317 |
Q |
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| T |
30153847 |
ctaatagaagaattgcagaaaaattaattacaaacatgcatgtcatacatgttgtcttaccatgacataattgtggaagtggaagtgtaaaataattttg |
30153748 |
T |
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| Q |
318 |
aat |
320 |
Q |
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||| |
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| T |
30153747 |
aat |
30153745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 30153715 - 30153609
Alignment:
| Q |
319 |
atcagtcaatccaactcaaatgaaatttaatatccatcatcaatggatggcacaaaccagatagagacataagagaatcctctataatttcactcacatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30153715 |
atcagtcaatccaactcaaatgaaatttaatatccatcatcaatggatggcacaaaccagaaagagacataagagaatcctctataatttcactcacatt |
30153616 |
T |
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| Q |
419 |
acctatg |
425 |
Q |
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| T |
30153615 |
acctatg |
30153609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 4257944 - 4258007
Alignment:
| Q |
212 |
taatgtctaatagaagaattgcagaaaaattaattacaaacatgcatgtcatacatgttgtctt |
275 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |||||| ||||| || ||||||| |
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| T |
4257944 |
taatgtccaatagaagaattgcagaacaattaattacaaatatgcatatcataaatcttgtctt |
4258007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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