View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20087_low_3 (Length: 389)
Name: NF20087_low_3
Description: NF20087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20087_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 5045516 - 5045885
Alignment:
| Q |
18 |
ctccttgcatacaaatatttgtttttatgaatctctgtcccactcaaattagtcatttgttagcacttgatgtgttgggaggtttctatcccacggttga |
117 |
Q |
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| T |
5045516 |
ctccttgcatacaaatatttgtttttatgaatct-tgttccattcaaattagtcatttgttagcacttgatgtgttgggaggtttctatcccacggttga |
5045614 |
T |
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| Q |
118 |
tcttggtgcannnnnnnnnnnnnggacgttcagtcttctttgtaattattaataagaaaaattaaaataacaagtcccttccaaaagctcttcttacgca |
217 |
Q |
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| T |
5045615 |
tcttggtgcaattttctttttttggacgttcagtcttctttgtaattattaataagaaaaattaaaataacaagtccctcccaaaagctcttcttacaca |
5045714 |
T |
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| Q |
218 |
cttcacaccatttcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagagggaattaattggaactgcaaagagtcga |
317 |
Q |
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| T |
5045715 |
cttcacaccatttcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagagggaattaactggaacagcaatgagtcga |
5045814 |
T |
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| Q |
318 |
cttgttctcaaagtagtgagtccaaaaacatcactagtatctatctcactagcattttcatctcactcgac |
388 |
Q |
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| T |
5045815 |
cttgttctcaaagtagtgagtccaaaaacatcactagtatctatctcactagcattttcatcccattcgac |
5045885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 370
Target Start/End: Original strand, 32312829 - 32312990
Alignment:
| Q |
218 |
cttcacaccatttcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagagggaa----------ttaattggaactgc |
307 |
Q |
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| T |
32312829 |
cttcacaccatttcttgttgaaactaa-agtattttggactttaccaaatttagttttgttgatttagagagggcacacaacacgcttagctggaactgc |
32312927 |
T |
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| Q |
308 |
aaagagtcgacttgttctcaaagtagtgagtccaaaaacatcactagtatctatctcactagc |
370 |
Q |
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| T |
32312928 |
aatgagtcgacttgctcgcggagcagtgagtccaaaaacatcactcgtatccatctcactagc |
32312990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 15814748 - 15814803
Alignment:
| Q |
19 |
tccttgcatacaaatatttgtttttatgaatctctgtcccactcaaattagtcattt |
75 |
Q |
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| T |
15814748 |
tccttgcatacaaatatttgtttttatgagtct-tgtccgactcagtttagtcattt |
15814803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 20378497 - 20378575
Alignment:
| Q |
19 |
tccttgcatacaaatatttgtttttatgaatctctgtcccactcaaattagtcatttgttagcacttgatgtgttgggag |
98 |
Q |
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| T |
20378497 |
tccttgcatacaaatatttgtttttatgagtct-tgtccgactcagtttggtcatttgataggagctgatgttttgggag |
20378575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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