View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20088_high_3 (Length: 335)
Name: NF20088_high_3
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20088_high_3 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 79 - 304
Target Start/End: Complemental strand, 103203 - 102975
Alignment:
| Q |
79 |
tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat |
178 |
Q |
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| T |
103203 |
tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat |
103104 |
T |
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| Q |
179 |
ttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcgtacattccattctccctgtgtaacagaaaact---nnnnnnnnttaccc |
275 |
Q |
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| T |
103103 |
ttcccttacacgcacacttgctgaaaggattgtcgacattcaagtaatgcttactttccattctccctgtgtaacagaaaactaaaaaaaaaaattaccc |
103004 |
T |
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| Q |
276 |
aacaggtaaatagaggtcgagctcagtag |
304 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
103003 |
aacaggtaaatagaggccgagctcagtag |
102975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 79 - 304
Target Start/End: Original strand, 32361 - 32572
Alignment:
| Q |
79 |
tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32361 |
tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat |
32460 |
T |
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| Q |
179 |
ttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcgtacattccattctccctgtgtaacagaaaact-nnnnnnnnttacccaa |
277 |
Q |
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| T |
32461 |
ttccc---------------ttgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaacagaaaactaaaaaaaaattacccaa |
32545 |
T |
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| Q |
278 |
caggtaaatagaggtcgagctcagtag |
304 |
Q |
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| T |
32546 |
caggtaaatagaggccgagctcagtag |
32572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 10426956 - 10427125
Alignment:
| Q |
83 |
gaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgatttcc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10426956 |
gaatatgctccactttacactcttcgactttatgaaaataacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgatttcc |
10427055 |
T |
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| Q |
183 |
cgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcgtacattccattctccctgtgtaa |
252 |
Q |
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| T |
10427056 |
cttacacacatacttgctgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaa |
10427125 |
T |
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