View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20088_high_4 (Length: 331)
Name: NF20088_high_4
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20088_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2554124 - 2553805
Alignment:
| Q |
1 |
agctctcccacaaagccagtgatcttgttctttctaacatgcacttcttcaatgtggtgcttggtctctgcattctccaaggcttcctcatcagaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2554124 |
agctctcccacaaagccagtgatcttgttctttctaacatgcacttcttcaatgtggtgcttggtctctgcattctccaaggcttcctcatcagaagaaa |
2554025 |
T |
|
| Q |
101 |
tgtcaccatcgtcgtcgtcatcatcagcatcacagttttctttctgtttgcagtaatttgcttgcgacaacctgcacttaaaattattataccacttgac |
200 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2554024 |
tgtcaccatcatcgtcgtcctcatcagcatcacagttttctttctgtttgcagtaatttgcttgcgacaacctgcacttaaaattattataccacttgac |
2553925 |
T |
|
| Q |
201 |
tagtgatcagac-nnnnnnngcagaacaatatcatatgcattgcatgagatgtttatcgaaaccgtgtgcatatcaatatttctccttaccctttgaaag |
299 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2553924 |
tagtgatcagacttttttttgcagaacaatatcatatgcattgcatgagatgtttatcaaaaccgtgtgcatatcaatatttctccttaccctttgaaag |
2553825 |
T |
|
| Q |
300 |
aaaatattcattagtagtat |
319 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2553824 |
aaaatattcattagtagtat |
2553805 |
T |
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