View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20088_high_6 (Length: 325)
Name: NF20088_high_6
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20088_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 40522620 - 40522927
Alignment:
| Q |
1 |
atgagggtaatggaaaatgaaaaaccaataaaataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggttt |
100 |
Q |
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| T |
40522620 |
atgagggtaatggaaaatgaaaaaccaataaaataatatactaattcatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggttt |
40522719 |
T |
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| Q |
101 |
tttatgggttaggagggttcaaattctatgaaaaaataatcaaaggaaggatacaaaagtatataatttggcaagaaaataaagaaagttatatattagt |
200 |
Q |
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| T |
40522720 |
tttatgggttaggagggttcaaattctatgaaaaaataa--------aggatacagaagtatataatttggcaagaaaataaagaaagttatatattaat |
40522811 |
T |
|
| Q |
201 |
tgagtgagagtgaattgattataactttgtgggggcaaatatagacagaaggaataaaatgtcaacttggtgtgaatgcattatgtatgtctgatgcttt |
300 |
Q |
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| T |
40522812 |
tgagtgagagtgaattgattataactttgtgggggcaaatatagacagaagcaataaaatgtcaacttggtgtgaatgcattatgtatgtctgttgcttt |
40522911 |
T |
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| Q |
301 |
tgga-gcaacagctag |
315 |
Q |
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|||| ||||||||||| |
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| T |
40522912 |
tggaggcaacagctag |
40522927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 40526569 - 40526690
Alignment:
| Q |
32 |
aataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggttttttatgggttaggagggttcaaattctatga |
131 |
Q |
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| T |
40526569 |
aataatatgctaatgcatttgagttctctgaaggattttcagaattaatggaagtgttgttcatggttttctatatgttgggagagttcaatttcaataa |
40526668 |
T |
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| Q |
132 |
aaaaataatcaaaggaaggata |
153 |
Q |
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|||| |||||| | ||||||| |
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| T |
40526669 |
taaaagaatcaaggaaaggata |
40526690 |
T |
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