View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20088_high_7 (Length: 305)
Name: NF20088_high_7
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20088_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 303
Target Start/End: Original strand, 33384213 - 33384481
Alignment:
| Q |
35 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattacaaaaattctatactggatttt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384213 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgccattcatgcacacgaatggaattacaaaaattctatactggatttt |
33384312 |
T |
|
| Q |
135 |
acttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattatctat |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
33384313 |
acttttaacgtttcaatcaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacggttagttgtctttgctaaaacttttatctat |
33384412 |
T |
|
| Q |
235 |
gaataaggacaggtagcaaggccacataccaaacctaaacaaggacccaactccctcacaatcgagcat |
303 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33384413 |
gaatacggacaggtagcaaggccacataccaaacctaaacaaggacccaactccctcgcaatcaagcat |
33384481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 33375874 - 33376120
Alignment:
| Q |
35 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattacaaaaattctatactggatttt |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||| || | |
|
|
| T |
33375874 |
tgcattcttatttgttgacacattggacatttgtcatttatattggcattatgccattcatgcacacgaatggaattacataaattctatactacatcat |
33375973 |
T |
|
| Q |
135 |
acttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattatctat |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | || |||||||||||| |||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
33375974 |
acttttaacgtttcagctaagattgtgcaatttgcttgaatactataatgccaaatccattttaggacggctagttgtctttgctaccacttttatctat |
33376073 |
T |
|
| Q |
235 |
gaataaggacaggtagcaaggccacataccaaacctaaacaaggacccaactc |
287 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33376074 |
ga------agagctagcaaggccacataccaaacctaaacaaggacctaactc |
33376120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 276
Target Start/End: Original strand, 33390317 - 33390560
Alignment:
| Q |
39 |
ttcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattaca---aaaattctatactgga----- |
130 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || ||| | ||| |||| |||||| ||||||||| || |||||||||||||||| |
|
|
| T |
33390317 |
ttcctattggttgacacattggacatttgtcatatatgttgacagcatgcgattcttgcaca--aatggaattgcagtgaaaattctatactggagtggg |
33390414 |
T |
|
| Q |
131 |
ttttacttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| || ||||||||||||||| ||| |||| |
|
|
| T |
33390415 |
ttttacttttaacgtttcagccaagattgtctaatttgctcgagtattctagtgccaaatccatcttagggcggctagttgtctttgctaccacttttat |
33390514 |
T |
|
| Q |
231 |
ctatgaataaggacaggtagcaaggccacataccaaacctaaacaa |
276 |
Q |
| |
|
||| | || | ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
33390515 |
ctacggatcatgacagctagcaaggccacagaccaaacctaaacaa |
33390560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University