View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20088_high_8 (Length: 304)

Name: NF20088_high_8
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20088_high_8
NF20088_high_8
[»] chr7 (2 HSPs)
chr7 (106-304)||(27776866-27777064)
chr7 (178-242)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (178-229)||(41218921-41218972)
chr5 (177-241)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (179-241)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (179-241)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (179-241)||(18254024-18254086)
chr4 (178-242)||(51764235-51764299)
chr4 (180-233)||(22643579-22643632)
chr4 (177-241)||(22176935-22176999)
chr4 (177-241)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (179-241)||(53978164-53978226)
chr3 (177-241)||(8836233-8836297)
chr3 (177-241)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (179-241)||(49641073-49641135)
chr1 (177-241)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (178-242)||(19481630-19481694)
chr2 (178-242)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (177-242)||(34309881-34309946)
chr6 (178-217)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (177-241)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 27776866 - 27777064
Alignment:
Q  106 atctgatgacatttgtgaagaatttatgtttgagtcttttttacagaagtaagggtattttacattaactttcttgtgttgaaacaccccaacaaaatgg 205  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27776866 atctgatgacaattgagaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatgg 27776965  T
Q  206 ggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcaca 304  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  27776966 ggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcaca 27777064  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 19741093 - 19741157
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 242  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  19741093 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtg 19741157  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 41218972 - 41218921
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaaca 229  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41218972 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 41218921  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 26472136 - 26472200
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  26472136 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 27208 - 27146
Alignment:
Q  179 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 15193146 - 15193208
Alignment:
Q  179 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 18254024 - 18254086
Alignment:
Q  179 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 51764235 - 51764299
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 242  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  51764235 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg 51764299  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 22643579 - 22643632
Alignment:
Q  180 tgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatatt 233  Q
    ||||||||||| |||||||||||||||  ||||||||| ||| |||||||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatatt 22643632  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 22176999 - 22176935
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  22176999 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 22176935  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 23167505 - 23167441
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    ||||||||||| || |||||||||||||||   |||||||| ||| | ||||| |||||||||||    
T  23167505 tcttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgt 23167441  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 53978164 - 53978226
Alignment:
Q  179 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 8836233 - 8836297
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  8836233 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 55310168 - 55310232
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||| ||||||| |||||    
T  55310168 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgt 55310232  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 49641135 - 49641073
Alignment:
Q  179 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 52777903 - 52777967
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  52777903 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 52777967  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 19481630 - 19481694
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 242  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  19481630 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg 19481694  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 11337765 - 11337829
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 242  Q
    |||||||||| || || |||||||||||||  |||||||| ||| ||||||| ||||||||||||    
T  11337765 cttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtg 11337829  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 34309881 - 34309946
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 242  Q
    ||||||||||| || || |||||||||||  | || ||||||||| |||||||||| |||||||||    
T  34309881 tcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatcctcaatgtg 34309946  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 21320833 - 21320870
Alignment:
Q  178 cttgtgttgaaacaccccaacaaaatggggtggttgaaag 217  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21320833 cttgtgttgaaac--cccaacaaaatggggtggttgaaag 21320870  T

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Target: scaffold0329 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 11232 - 11296
Alignment:
Q  177 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 241  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  11232 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 11296  T

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