View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20088_low_3 (Length: 245)
Name: NF20088_low_3
Description: NF20088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20088_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 25540779 - 25540566
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
110 |
Q |
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| T |
25540779 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
25540680 |
T |
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| Q |
111 |
atgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt |
210 |
Q |
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| T |
25540679 |
atgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt |
25540580 |
T |
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| Q |
211 |
tagctttgaggatt |
224 |
Q |
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|||||||||||||| |
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| T |
25540579 |
tagctttgaggatt |
25540566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 25534248 - 25534070
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
104 |
Q |
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| T |
25534248 |
catcttcaataattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagttgcatagaaaaggtacacattcagttacttggtttac |
25534150 |
T |
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| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
185 |
Q |
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| T |
25534149 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca |
25534070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 25516165 - 25516359
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
104 |
Q |
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||||||||||||||||||| ||||||||||| |||| |||||||||||| | | |||| |||||||||||| |||||||| ||||||||||| |
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| T |
25516165 |
catcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattagaaa-aacatgtttgcatatgaaaggtacacattcagttacttggtttac |
25516263 |
T |
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| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagtt |
200 |
Q |
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| T |
25516264 |
tttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgtatctagtt |
25516359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 25526246 - 25526068
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatac------ttggtttac |
104 |
Q |
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|||| ||||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| || ||||||||||| | |||||| | || |||||| |
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| T |
25526246 |
catcttcagtaattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagctgcatatgaaatgcacacattcagttagtttgtttac |
25526148 |
T |
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| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
185 |
Q |
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|||||||||||||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||||||| |
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| T |
25526147 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca |
25526068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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