View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20089_high_6 (Length: 203)
Name: NF20089_high_6
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20089_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 2621595 - 2621771
Alignment:
| Q |
20 |
aggaccaaatcgatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaac |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621595 |
aggaccaaaccgatgacaccccatctatcatgaatagagatcacatgcaaaacatgagtggttgtagactcgtgagtccatctaactctttcaactcaac |
2621694 |
T |
|
| Q |
120 |
aacgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621695 |
aacgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatg |
2621771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 2590042 - 2590204
Alignment:
| Q |
34 |
gacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaacaacgcgaggcagtg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| ||| || |||||| |||| ||||||| || |
|
|
| T |
2590042 |
gacaccccatctatcatgaataaagatcacatgcaaaacacgagtacttgtagactcgttagtccttctagctccttgaactcagcaacacgaggcaatg |
2590141 |
T |
|
| Q |
134 |
atgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatg |
196 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2590142 |
atgatgttttaaactataacaatgttgttgaagatgttgctactaaatttgtagttgatgatg |
2590204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 2571421 - 2571275
Alignment:
| Q |
22 |
gaccaaatcgatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaacaa |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| || || ||||||| ||||||| |||| |||||||||||||| | |
|
|
| T |
2571421 |
gaccaaagtgatgacactccatctatcatgaatagagatcacatggaaatcacgagtagtcgtagacttgtgagtcattctagctctttcaactcaatga |
2571322 |
T |
|
| Q |
122 |
cgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagat |
168 |
Q |
| |
|
| | || |||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
2571321 |
cacacggtggtgatgatatcgttaattataacaatgatgttgaagat |
2571275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 2674903 - 2674756
Alignment:
| Q |
31 |
gatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatct---aactctttcaactcaacaacgcgag |
127 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||||||||||| || || |||||||||| |||| ||| | |||||||||||||| || | | |
|
|
| T |
2674903 |
gatgacactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatg |
2674804 |
T |
|
| Q |
128 |
gcagtgatgatgtttttaattataacaatgtcgttgaagatgttgtta |
175 |
Q |
| |
|
| |||||||| | |||||||||||||||| ||||||||| |||||| |
|
|
| T |
2674803 |
gtggtgatgatatccttaattataacaatgttgttgaagatattgtta |
2674756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 2643044 - 2642967
Alignment:
| Q |
41 |
catctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaa |
118 |
Q |
| |
|
||||||||||||| | || |||||||||||||||| || || ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
2643044 |
catctatcatgaacagaggtcacatgcaaaacacgagtagtcgtagactcgtgagtcgttctagctctttcaactcaa |
2642967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 2449392 - 2449472
Alignment:
| Q |
35 |
acaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaact |
115 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| ||||||||| || || || ||||||||||| |||| ||||||||||| |
|
|
| T |
2449392 |
acactccacctatcatgaatagagatcacatccaaaacacgtgtagtgatacactcgtgagtcgttctagctctttcaact |
2449472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 2436309 - 2436341
Alignment:
| Q |
143 |
ttaattataacaatgtcgttgaagatgttgtta |
175 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
2436309 |
ttaattataacaatgttgttgaagatgttgtta |
2436341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University