View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20089_low_1 (Length: 678)

Name: NF20089_low_1
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20089_low_1
NF20089_low_1
[»] chr1 (4 HSPs)
chr1 (12-534)||(15593742-15594262)
chr1 (570-661)||(15593648-15593740)
chr1 (24-278)||(4679507-4679758)
chr1 (215-255)||(29464835-29464875)
[»] chr2 (1 HSPs)
chr2 (20-286)||(16662947-16663210)
[»] chr7 (7 HSPs)
chr7 (21-286)||(8586659-8586921)
chr7 (21-278)||(8615676-8615930)
chr7 (18-140)||(3146363-3146485)
chr7 (23-140)||(8645976-8646093)
chr7 (23-134)||(8640653-8640764)
chr7 (24-85)||(13334321-13334382)
chr7 (214-279)||(8658323-8658388)
[»] chr4 (1 HSPs)
chr4 (18-199)||(30774289-30774470)
[»] chr8 (3 HSPs)
chr8 (25-134)||(43743918-43744027)
chr8 (28-138)||(43445783-43445894)
chr8 (350-490)||(1767117-1767256)
[»] chr5 (1 HSPs)
chr5 (25-113)||(28219041-28219129)
[»] scaffold0248 (1 HSPs)
scaffold0248 (316-388)||(17757-17829)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 15594262 - 15593742
Alignment:
Q  12 gaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594262 gaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataagg 15594163  T
Q  112 atgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatga 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  15594162 atgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatga 15594063  T
Q  212 agtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactgactagttatattcttctttgtttagcataaca 311  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||| ||||    
T  15594062 agtagatgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactggctagttttactcttctttgttcagcacaaca 15593963  T
Q  312 aacatttaggttgattatcattatctaaaagtattgatgtttatgatgaaatctgcatggaacatgttacttaaattgtttgtgtgttttgtcttgtttt 411  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||| || |||||||||||    
T  15593962 aacatttaggttgattatcattatcaaaaagtattgatgtttatgatgaaatttgcacgaaacatgttgcttaaattgtttgtgttttctgtcttgtttt 15593863  T
Q  412 ctagttttagtagagcatatttg-aaacactgcttccaaattaagatccctatcaggctcttgtgctttagttaataatcnnnnnnnggtttatttgagc 510  Q
    |||||||||||  |||||||||| ||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||       |||||||||||||    
T  15593862 ctagttttagt--agcatatttgaaaaccttgcttccaaatcaagatccctatcaggcacttgtgctttagttaataatc-gtttttggtttatttgagc 15593766  T
Q  511 tttctttgcaccttgtctcccaaa 534  Q
    ||||| || ||||||||| |||||    
T  15593765 tttctatggaccttgtcttccaaa 15593742  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 570 - 661
Target Start/End: Complemental strand, 15593740 - 15593648
Alignment:
Q  570 catgatgaacttttgaatagagtac-atgtaacaggactggttttgctctataaagcttgaacttgaacacctacatgacattgacacgttga 661  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| ||||  | |||||||||||||||| ||||    
T  15593740 catgatgaacttttgaatacagtactatgtaataggactggttttgatctataaagcttgaacgtgaatgcttacatgacattgacacattga 15593648  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 4679507 - 4679758
Alignment:
Q  24 gaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaa 123  Q
    |||||| |||||||  ||||||||||  ||||||||| |||||| ||    |||||||||||  | |  |||||| | ||||| |||||||| || ||||    
T  4679507 gaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaa 4679606  T
Q  124 aactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttct 223  Q
    | ||||||| | | |||  |  |||||| || | |||||||||||||||  | || |||||||||||||| ||  | |||   || ||| ||||||||||    
T  4679607 agctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacag---aaagaaatagatgttct 4679703  T
Q  224 tgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagact 278  Q
    ||||| | ||||||||||| | ||||||||||| ||||| |||| ||||||||||    
T  4679704 tgaggatcatctgaaggagttggagagcatgttggaaaagcttgaagtcaagact 4679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29464875 - 29464835
Alignment:
Q  215 agatgttcttgagggtaatctgaaggagctcgagagcatgt 255  Q
    |||||||||||||||| ||||| ||||||| ||||||||||    
T  29464875 agatgttcttgagggtcatctggaggagctggagagcatgt 29464835  T

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Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 16662947 - 16663210
Alignment:
Q  20 tgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaa 119  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||| ||||| |||||||| ||||||||| ||||||||    
T  16662947 tgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattgaggaatgctctaaagaataagaatgtcaaa 16663046  T
Q  120 ttaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatg 219  Q
    ||||| || ||||   || ||  || |||||| |||  ||||||||| ||||||  | |||||||| || ||||||   |||||   |||||||||||||    
T  16663047 ttaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggtggctaaagatttgcttcatgagaaga---accaggggaatgaagtagatg 16663143  T
Q  220 ttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactgactagtt 286  Q
    ||||||||| | ||||||||||||| ||||| ||||| ||  |||||||| ||||||||| ||||||    
T  16663144 ttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgtctagtt 16663210  T

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Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 8586659 - 8586921
Alignment:
Q  21 gctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaat 120  Q
    ||||| ||| |||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| | |||     
T  8586659 gctgaggatcagaaattcctaaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaac 8586758  T
Q  121 taaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgt 220  Q
    ||||   ||||||| || |||||| |||||| |||  |||||||||| ||||| ||||||||||||||   |||||| ||||| | |||||  |||||||    
T  8586759 taaagtgctcttctcaaaaagttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgat---aagaataaccaggagaatgacatagatgt 8586855  T
Q  221 tcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactgactagtt 286  Q
    ||||| || | ||||||||||||| ||||||||||| ||| ||||| | ||||||| || ||||||    
T  8586856 tcttgtggatcatctgaaggagcttgagagcatgttggaagaccttttggtcaagagtggctagtt 8586921  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 8615930 - 8615676
Alignment:
Q  21 gctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaat 120  Q
    ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||  ||||||||||||| |||||||| ||||||||||||||    |    
T  8615930 gctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatttacaagttgaggaatgctctaaagaataaggatgttgctt 8615831  T
Q  121 taaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgt 220  Q
    |||| || || ||| || |||||  ||| || ||   ||||||||| |||||| ||||||||||||||   | |||| ||||||| | ||||||||| ||    
T  8615830 taaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatttgcttgat---aggaataaccagcagagtgaagtagaagt 8615734  T
Q  221 tcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagact 278  Q
    ||| || | | |||||||||||||| | || ||||| ||| |||||||| | ||||||    
T  8615733 tctcgaagatcatctgaaggagctcaaaagtatgttggaagaccttgtatttaagact 8615676  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 3146485 - 3146363
Alignment:
Q  18 cgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtca 117  Q
    |||| ||| ||||| ||||| |||||||||||  | |||||||||||||||||| | |||||||||||| ||| ||||||| | ||||| |||||||| |    
T  3146485 cgtgttgaggatgaaaaatttctaaggaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtga 3146386  T
Q  118 aattaaaactctcttctaaagaa 140  Q
    |  |||| ||||| ||| |||||    
T  3146385 atataaatctctcctctcaagaa 3146363  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 8646093 - 8645976
Alignment:
Q  23 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 122  Q
    |||||||||||||||||||||||||||  | |||||||||| ||||||  | ||  |||| ||| |||  || ||||| ||||  |||||||| ||||||    
T  8646093 tgaagatgagaaattcctaaggaaggccaatgtaatgaatggattagaccattgcatttataagctgaagaaagctctaaagaggaaggatgttaaatta 8645994  T
Q  123 aaactctcttctaaagaa 140  Q
    || ||||| |||||||||    
T  8645993 aatctctcatctaaagaa 8645976  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 8640653 - 8640764
Alignment:
Q  23 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 122  Q
    ||||| |||||||||||||||||||||  |  ||||||||| ||||||  | ||  |||||||| |||  |||||||| |||||||||||| | ||| ||    
T  8640653 tgaagctgagaaattcctaaggaaggccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaataaggatattaaacta 8640752  T
Q  123 aaactctcttct 134  Q
    || |||||||||    
T  8640753 aagctctcttct 8640764  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 13334321 - 13334382
Alignment:
Q  24 gaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaa 85  Q
    |||||| |||||||| ||||||||||  ||||||||||||||||||||   |||||||||||    
T  13334321 gaagataagaaattcttaaggaaggccaaggtaatgaatgcattagattcttgtgtttacaa 13334382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 8658388 - 8658323
Alignment:
Q  214 tagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactg 279  Q
    |||||||| |||||| | ||||||||||||| || | |||||| ||||| ||||||||||| ||||    
T  8658388 tagatgttgttgaggatcatctgaaggagctggaaatcatgttggaaaagcttgtagtcaatactg 8658323  T

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Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 30774470 - 30774289
Alignment:
Q  18 cgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtca 117  Q
    |||||||||||||||||||||||||||||| |   |||||||||||||||||||  |||  ||||||||||||| |||| ||| |||| |||||| || |    
T  30774470 cgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctgcatttacaagttgaggaatggtctaaagattaaggacgtaa 30774371  T
Q  118 aattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgcttgataagaagaatca 199  Q
    | ||||| || || ||| || || | | |||||| | || ||||||| |||||||| ||||||||||||||||||| |||||    
T  30774370 atttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggctacaaatttgcttgataagaataatca 30774289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 43744027 - 43743918
Alignment:
Q  25 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaa 124  Q
    ||||||||||||| || ||||| ||  | |||||||||||||||||||| || |||||||||||||| |||||| | |||||||||||||| ||||||||    
T  43744027 aagatgagaaatttcttaggaaagccaatgtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaa 43743928  T
Q  125 actctcttct 134  Q
     || ||||||    
T  43743927 gctttcttct 43743918  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 43445894 - 43445783
Alignment:
Q  28 atgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtg-tttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaac 126  Q
    |||||||||| || ||||||||  | |||||||||||||||||||| || | |||||| |||||| |||| | | |||||||||||| | |||||||| |    
T  43445894 atgagaaatttcttaggaaggccaatgtaatgaatgcattagatgaatgggttttacaggttgaggaatgttgtaaagaataaggatattaaattaaagc 43445795  T
Q  127 tctcttctaaag 138  Q
    |||| |||||||    
T  43445794 tctcgtctaaag 43445783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 490
Target Start/End: Complemental strand, 1767256 - 1767117
Alignment:
Q  350 gtttatgatgaaatctgcatggaacatgttacttaaattgtttgtgtgttttgtcttgttttctagttttagtagagcatatttg-aaacactgcttcca 448  Q
    ||||||||| || | ||||| ||||||| |||||||||||||| ||| || | ||||||||| ||||||||||  | |||||||| ||||  |||||| |    
T  1767256 gtttatgatcaagtttgcattgaacatgctacttaaattgtttctgttttctttcttgttttttagttttagt--aacatatttgaaaaccttgcttcaa 1767159  T
Q  449 aattaagatccctatcaggctcttgtgctttagttaataatc 490  Q
     || ||||||||| |  || |||||||||  |||||||||||    
T  1767158 gatcaagatccctttatggttcttgtgctcaagttaataatc 1767117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 28219129 - 28219041
Alignment:
Q  25 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggat 113  Q
    ||||||| ||||| |||||||||||  | || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  28219129 aagatgaaaaatttctaaggaaggccaatgtcatgaatgcattagatgactgcgtttacaagttgaggaatgctctaaagaataaggat 28219041  T

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Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 17757 - 17829
Alignment:
Q  316 tttaggttgattatcattatctaaaagtattgatgtttatgatgaaatctgcatggaacatgttacttaaatt 388  Q
    |||||||| ||||||||||||||| | |||||| ||||||  | |||| ||||| ||||||||||||||||||    
T  17757 tttaggttaattatcattatctaacattattgaagtttattgtaaaatttgcattgaacatgttacttaaatt 17829  T

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