View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20089_low_2 (Length: 520)
Name: NF20089_low_2
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20089_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 28 - 505
Target Start/End: Complemental strand, 25540332 - 25539855
Alignment:
| Q |
28 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540332 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
25540233 |
T |
|
| Q |
128 |
gcctatttggattgactagttttgggcgtatgtgagctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
227 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540232 |
gcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
25540133 |
T |
|
| Q |
228 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatc |
327 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540132 |
ccataagttgtttgtcataagctctcttaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatc |
25540033 |
T |
|
| Q |
328 |
gctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540032 |
gctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtca |
25539933 |
T |
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| Q |
428 |
tgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatgttccttgtgaccttgtttt |
505 |
Q |
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| T |
25539932 |
tgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtttatccatgttccttgtgaccttgtttt |
25539855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 25517261 - 25517494
Alignment:
| Q |
28 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
127 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517261 |
ataatacggttgcttgttattacatttgattttgatataaaggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
25517360 |
T |
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| Q |
128 |
gcctatttggattgactagttttgggcgtatgtgagctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
227 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25517361 |
gcctatttggattgactagttttgggcgta------------tggtatatgcactttatagaggtgtttgggtgagagtatcacaagagcttatgagctc |
25517448 |
T |
|
| Q |
228 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
273 |
Q |
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| T |
25517449 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 320 - 486
Target Start/End: Original strand, 25517537 - 25517703
Alignment:
| Q |
320 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgcttt |
419 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctcaactcatgtattcatcaacgttccttgtattttgggtcgatttgcctgcttt |
25517636 |
T |
|
| Q |
420 |
ctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
486 |
Q |
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| T |
25517637 |
ttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
25517703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 25524762 - 25524598
Alignment:
| Q |
28 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagca----ctctttttgtatg |
123 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||| ||||||||| |||| |||||||| |
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| T |
25524762 |
ataatacggttgcttcttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatg |
25524663 |
T |
|
| Q |
124 |
aagggcctatttggattgactagttttgggcgtatgtgagctcttttggtatatgcactttatag |
188 |
Q |
| |
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|| ||||| |||||||| |||| ||||||| |||| || |||||||||||||||||||||||||| |
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| T |
25524662 |
aaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 25537244 - 25537194
Alignment:
| Q |
47 |
ttacatttgattttgatataacggatttgtagctagtgcagcttatgaactct |
99 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| |||||||||||| |
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| T |
25537244 |
ttacatttgattttgatatgaaggat--gtagctagtgcatcttatgaactct |
25537194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
221 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
280 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
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| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
212 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
270 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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