View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20089_low_3 (Length: 362)
Name: NF20089_low_3
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20089_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 2620329 - 2620680
Alignment:
| Q |
1 |
caggttagtgttgattgcttttgccacaatgcgaatatacaaagtttattaatcagttctttctcatcaaaaggcttacctaaaaacaaaatagtagtac |
100 |
Q |
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| T |
2620329 |
caggttagtgttgattgcttttgccacaatgcgaatatacaaagtttatcgatcagttctttctcatcaaaaggcttacctaaaaacaaaatagtagtac |
2620428 |
T |
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| Q |
101 |
gggttgtccagacgaaccatacaactgaatgtcggattgacaaaaaaccacatataatctttccccactaaaccagccctgaagacacctcaaaaagaca |
200 |
Q |
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| T |
2620429 |
gggttgtccagacgaaccatacaactgaatgtcggattgacaaaaaaccacatataatctttccccactaaaccagccctgaagacacctcaaaaagaca |
2620528 |
T |
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| Q |
201 |
ttatgcaacaacaattgttgttgcaatgttgatggaaaaacctctaaaatctttatgttgtggccacaacataattgcgattgtagagtgcaatttagaa |
300 |
Q |
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| T |
2620529 |
ttatgcaacaacaattgttgttgcaatgttgatggaaaaacctctaaaatctttatgttgtggccacaatataattgcgactgtagagtgcaatttagaa |
2620628 |
T |
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| Q |
301 |
ctatggtaaagagttaaagataaactaacatatttaaattccactgatgatg |
352 |
Q |
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| T |
2620629 |
ctatggtaaagagttaaagataaactaacatatttaaattccactggtgatg |
2620680 |
T |
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