View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20089_low_6 (Length: 253)
Name: NF20089_low_6
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20089_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37652281 - 37652043
Alignment:
| Q |
1 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37652281 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaacaacaatgtcgttgttaatgtattcaacaaccttgatgaa |
37652182 |
T |
|
| Q |
101 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37652181 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
37652082 |
T |
|
| Q |
201 |
cctacaaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| |
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| T |
37652081 |
cctacaaatttcaagtgaaggatcaaattggaagttact |
37652043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37635254 - 37635016
Alignment:
| Q |
1 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37635254 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaa |
37635155 |
T |
|
| Q |
101 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |
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| T |
37635154 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactata |
37635055 |
T |
|
| Q |
201 |
cctacaaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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| T |
37635054 |
cctacaaattccaagtgaaggatcaaattggaagttact |
37635016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37638168 - 37637930
Alignment:
| Q |
1 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37638168 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaa |
37638069 |
T |
|
| Q |
101 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |
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| T |
37638068 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactata |
37637969 |
T |
|
| Q |
201 |
cctacaaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37637968 |
cctacaaattccaagtgaaggatcaaattggaagttact |
37637930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37646456 - 37646218
Alignment:
| Q |
1 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37646456 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaa |
37646357 |
T |
|
| Q |
101 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |
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| T |
37646356 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactata |
37646257 |
T |
|
| Q |
201 |
cctacaaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37646256 |
cctacaaattccaagtgaaggatcaaattggaagttact |
37646218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37649369 - 37649131
Alignment:
| Q |
1 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37649369 |
ccagcagggtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaa |
37649270 |
T |
|
| Q |
101 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |
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| T |
37649269 |
ccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactata |
37649170 |
T |
|
| Q |
201 |
cctacaaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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| T |
37649169 |
cctacaaattccaagtgaaggatcaaattggaagttact |
37649131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 37641074 - 37640844
Alignment:
| Q |
9 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37641074 |
gtatccttattaatggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgctaatgtattcaacaaccttgatgaaccattgct |
37640975 |
T |
|
| Q |
109 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
37640974 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccctggtgttcaatgccccattcttcctgggactaactatacctacaaa |
37640875 |
T |
|
| Q |
209 |
ttccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
37640874 |
ttccaagtgaaggatcaaattggaagttact |
37640844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 32388586 - 32388353
Alignment:
| Q |
6 |
agggtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccatt |
105 |
Q |
| |
|
||||||| || || |||||||||||||| ||||||||||| ||| | |||||||||||||| |||| ||||| || ||||||||||||||||| ||| | |
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|
| T |
32388586 |
agggtattctcatcaacggtcaattcccgggacctgaaattaacggtaccagcaacaacaacattgtagttaacgttttcaacaaccttgatgagccact |
32388487 |
T |
|
| Q |
106 |
gcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctac |
205 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| || || ||| ||||| || || || ||||| |||||| || ||||| |||||||||||| |
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|
| T |
32388486 |
ccttttcacatggagcggtattcaacaaaggaaaaactcgtgggccgatggaacatcgggagtccaatgtcctattgccccgggaaccaactacacctac |
32388387 |
T |
|
| Q |
206 |
aaattccaagtgaaggatcagattggaagttact |
239 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||| |
|
|
| T |
32388386 |
aaattccaggttaaggatcaaattggtagttact |
32388353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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