View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20089_low_7 (Length: 250)
Name: NF20089_low_7
Description: NF20089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20089_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 2002722 - 2002958
Alignment:
| Q |
4 |
cacaactttgcttttatgcagtgttatgcatcttgttatgactcatgccctgggtttaaagttttggcatcatattcatctgaagatgctcgtggtttac |
103 |
Q |
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| T |
2002722 |
cacaactttgcttttatgcagtgttatgcatcttgttatggctcatgccctgggtttaaagttttggcaccatattcatctgaagatgctcgtggtttac |
2002821 |
T |
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| Q |
104 |
ttaaa-ctgctataagggacccctgatcctgtagttttccttaaaaatgagttgttgtaagttgttgtgctgcttaattagtaattctaaatgcgttgtt |
202 |
Q |
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| T |
2002822 |
ttaaagctgctataagggacccc-gatcctgcagttttccttgaaaatgagttattgtaagttgttgtgctgcttaattagtaattctaaatgcgttgtt |
2002920 |
T |
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| Q |
203 |
gaagcttgaagatttctaacattatttctgtgcctatg |
240 |
Q |
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| T |
2002921 |
gaagcttgaagatttctaacattatttctgtgcctatg |
2002958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 90257 - 90484
Alignment:
| Q |
1 |
ccccacaactttgcttttatgcagtgttatgcatcttgttatgactcatgccctgggtttaaagttttggcatcatattcatctgaagatgctcgtggtt |
100 |
Q |
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| T |
90257 |
ccccacaactttgcttttatgcagtgttatgcatcttggtatggctcatgtcctgggttgaaagttttggcaccatattcatctgaagatgctcgtggtt |
90356 |
T |
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| Q |
101 |
tacttaaa-ctgctataagggacccctgatcctgtagttttccttaaaaatgagttgttgtaagttgttgtgctgcttaattagtaattctaaatgcgtt |
199 |
Q |
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| T |
90357 |
tacttaaagctgctataaggga-ccctgatcctgtagttttccttgaaaatgagttgctgtaa---gttgtgctgcttaattagtaattttaaatgagtt |
90452 |
T |
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| Q |
200 |
gttgaagcttgaagatttctaacattatttct |
231 |
Q |
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| T |
90453 |
gttgaagcttgaagatttctaacattatttct |
90484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 2004381 - 2004572
Alignment:
| Q |
40 |
tatgactcatgccctgggtttaaagttttggcatcatattcatctgaagatgctcgtggtttacttaaa-ctgctataagggacccctgatcctgtagtt |
138 |
Q |
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| T |
2004381 |
tatggctcatgccctgggttgaaagttttggcaccatattcatctgatgatgctcgtggtttacttaaagctgctataagggacccc-gatcctgcagtt |
2004479 |
T |
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| Q |
139 |
ttccttaaaaatgagttgttgtaagttgttgtgctgcttaattagtaattctaaatgcgttgttgaagcttgaagatttctaacattatttct |
231 |
Q |
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| T |
2004480 |
ttccttgaaaatgagttgttgtaagttgttgtgctgcttaattagtaattctaaatgagttgttgaagcttgaaaatttctaacattatttct |
2004572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 1980453 - 1980596
Alignment:
| Q |
85 |
gaagatgctcgtggtttacttaaa-ctgctataagggacccctgatcctgtagttttccttaaaaatgagttgttgtaagttgttgtgctgcttaattag |
183 |
Q |
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| T |
1980453 |
gaagatgctcgtggtttacttaaagctgctataagggaccc-tgatcctgtagttttccttgaaaatgagttgttgtaagttg---tgctgcttaattag |
1980548 |
T |
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| Q |
184 |
taattctaaatgcgttgttgaagcttgaagatttctaacattatttct |
231 |
Q |
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| T |
1980549 |
taattctaaatgagttgttgaagcttgaagatttctaacattatttct |
1980596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 22352444 - 22352554
Alignment:
| Q |
52 |
cctgggtttaaagttttggcatcatattcatctgaagatgctcgtggtttactta-aactgctataagggacccctgatcctgtagttttccttaaaaat |
150 |
Q |
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|||| ||||||||||||| | | ||||||||||||||||| |||||||| | | | ||||||||||||| ||||| ||||| | |||||||| ||||| |
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| T |
22352444 |
cctgagtttaaagttttgacgccgtattcatctgaagatgcatgtggtttattcagagctgctataaggga-ccctggtcctgcatttttccttgaaaat |
22352542 |
T |
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| Q |
151 |
gagttgttgtaa |
162 |
Q |
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||||| |||||| |
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| T |
22352543 |
gagttcttgtaa |
22352554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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