View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2008_high_2 (Length: 543)
Name: NF2008_high_2
Description: NF2008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2008_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Complemental strand, 33643591 - 33643076
Alignment:
| Q |
15 |
aatagttgggtggttggagcttggaagtaaagtaactcacaccactggaaatatttgcaagnnnnnnnatactagaatttatcaaaatattaatgtgaat |
114 |
Q |
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| T |
33643591 |
aatagttgggtggttggaacttggaagtaaagtaactcacaccactggaaatatttgcaagtttttttatactagaatttatcaaaatattaatgtgaat |
33643492 |
T |
|
| Q |
115 |
gtttcataaatcagagcactggtgacaatttttatgtctagatttattaataataatactaatttctaactgtatcannnnnnngtttcaaacctaccaa |
214 |
Q |
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| T |
33643491 |
gtttcataaatcagagcactggtgacaatttttatgtctagatttattaataataatactaacttctaactgtatcatttttttgtttcaaacctaccaa |
33643392 |
T |
|
| Q |
215 |
tttgccagattgttaaatttttctgtcctttagtagtctccgtaggaactatggatctgtgtgataatcttggttaattttatgaaacttaaatcttatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643391 |
tttgccagattgttaaatttttctgtcctttagtagtctccgtaggaactatggatctgtgtgataatcttggttaattttatgaaacttaaatcttatt |
33643292 |
T |
|
| Q |
315 |
atatgattttaaattgctattcattcagatattgccacatcaaatgttttagta---atacagaagcacgttttctcaatatttctctagtattattgtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643291 |
atatgattttaaattgctattcattcagatattgccacatcaaatgttttagtatatatacagaagcacgttttctcaatatttctctagtattattgtt |
33643192 |
T |
|
| Q |
412 |
ctggcagaagcttgcaaaattgcaaatgaagtttaatgtgtttgctagaaaataatcaaactatacatgaggaccataacaacacgtaatcaaaactact |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643191 |
ctggcagaagcttgcaaaattgcaaatgaagtttaatgtgtttgctagaaaataatcaaactatacatgaggaccataacaacacgtaatcaaaactact |
33643092 |
T |
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| Q |
512 |
tatttgaagaatcatc |
527 |
Q |
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|||||||||||||||| |
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| T |
33643091 |
tatttgaagaatcatc |
33643076 |
T |
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