View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2008_low_1 (Length: 744)
Name: NF2008_low_1
Description: NF2008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2008_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 19469720 - 19470125
Alignment:
| Q |
12 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
|
| Q |
112 |
ttttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatc |
211 |
Q |
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||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
|
| Q |
212 |
tagggaatattattagatgttttcacgttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
311 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19469920 |
tagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
19470019 |
T |
|
| Q |
312 |
gctcatttggctcttcaggttcctgataggatttggtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagttt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19470020 |
gctcatttggctcttcaggttcctgataggatttggttagaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagttt |
19470119 |
T |
|
| Q |
412 |
ttgttt |
417 |
Q |
| |
|
|||||| |
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|
| T |
19470120 |
ttgttt |
19470125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 500 - 728
Target Start/End: Original strand, 19470210 - 19470438
Alignment:
| Q |
500 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaagtcgaagatgacaatcttcaa |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19470210 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaattcgaagatgacaatcttcaa |
19470309 |
T |
|
| Q |
600 |
cttaaaaaattaatctgcagtttctnnnnnnnnnctataagctgcaacttttcagctctgctatcaataggaacataggaagactcagtcattactcttt |
699 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19470310 |
cttaaaaaattaatctgcagtttctaagaaaaaactataagctgcaacttttgagctctgctatcaataggaacataggaagactcagtcattactcttt |
19470409 |
T |
|
| Q |
700 |
tcattatatttaagactgaaccatcttat |
728 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
19470410 |
tcattatatttaagactgaaccatcttat |
19470438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 721
Target Start/End: Complemental strand, 2239780 - 2239704
Alignment:
| Q |
648 |
ttttcagctctgctatcaataggaacataggaagactcagtcatt---actcttttcattatatttaagactgaacc |
721 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||| | ||||||| ||| |||||||||||||||||| |||||| |
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|
| T |
2239780 |
ttttcagctctgcgatcaataggaacattgtaagattgagtcattataactattttcattatatttaagattgaacc |
2239704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 47865596 - 47865355
Alignment:
| Q |
14 |
agatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
|
| Q |
114 |
ttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatcta |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
|
| Q |
214 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47865396 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 500 - 728
Target Start/End: Complemental strand, 47864241 - 47864019
Alignment:
| Q |
500 |
aattcatatgctatgtgatgctgattttaatttagatgtgtcaattccagttaataatcttcaacttatatatcacaaagtcgaagatgacaatcttcaa |
599 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47864241 |
aattcatatgctatgtgatgcttattttaattcagatgt-tcaattccagttaataatcttcaacttatatatcacaaagtcgaagatgacaatcttcaa |
47864143 |
T |
|
| Q |
600 |
cttaaaaaattaatctgcagtttctnnnnnnnnnctataagctgcaacttttcagctctgctatcaataggaacataggaagactcagtcattactcttt |
699 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47864142 |
cttaaaaaattaatctgcagt-----agaaaaaactataaactgcaacttttcagctctgctatcaataggaacataggaagactcagtcattactcttt |
47864048 |
T |
|
| Q |
700 |
tcattatatttaagactgaaccatcttat |
728 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
47864047 |
tcattatatttaagactgaaccatcttat |
47864019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 47864488 - 47864317
Alignment:
| Q |
247 |
aacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
346 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
|
| Q |
347 |
gtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagtttttgtttc |
418 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
47864388 |
gttggaggaagtgcttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttgtttc |
47864317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 721
Target Start/End: Complemental strand, 32382050 - 32381974
Alignment:
| Q |
648 |
ttttcagctctgctatcaataggaacataggaagactcagtc---attactcttttcattatatttaagactgaacc |
721 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||| |||| || |||||||||||||||||||||| |||||| |
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|
| T |
32382050 |
ttttcagctctgcgatcaataggaacattgtaagactgagtcataataactcttttcattatatttaagattgaacc |
32381974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 637 - 721
Target Start/End: Original strand, 20790571 - 20790655
Alignment:
| Q |
637 |
taagctgcaacttttcagctctgctatcaataggaacataggaagactcagtcattactcttttcattatatttaagactgaacc |
721 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||| | |||||| | | | |||| | |||||||||| ||||||||||| |
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|
| T |
20790571 |
taagctgcaatttttcagctctgcgataaataggaacattgtaagactgacttaaaactcatctcattatattcaagactgaacc |
20790655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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