View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2008_low_3 (Length: 382)
Name: NF2008_low_3
Description: NF2008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2008_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 14987858 - 14988212
Alignment:
| Q |
19 |
cttgtacaacacgtccaccttataatatactcttccttccacctctatttcctcactgccaaaaacaaacaaactcaacaatgaaaccttgcatggtttt |
118 |
Q |
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| T |
14987858 |
cttgtacaacacgtccaccttataatatactcttccttccacctctatttcctcactgcaaaaaacaaacaaactcaacaatgaaaccttgcatggtttt |
14987957 |
T |
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| Q |
119 |
tctctttgtcttgttctttcttcatagctatgttcaaggacgttttgtggtagagaaaaacagtatcacggttctatcaccacataaactaagaggtaaa |
218 |
Q |
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| T |
14987958 |
tctctttgtcttgttctttcttcatagctatgttcaaggacgttttgtggtagagaaaaacagcataacggttctatcaccacataaactaagaggtaaa |
14988057 |
T |
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| Q |
219 |
aacgatggtgctataggaaactttggtattccaaattatggagggtatattgtagggtcacttgtttatcctgaaaaaggctctcatggttgtcaagtct |
318 |
Q |
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| T |
14988058 |
aacgatggtgctataggaaactttggtattccaaattatggagggtatattgtagggtcacttgtttatcctgaaaaaggctctcatggttgtcaagtct |
14988157 |
T |
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| Q |
319 |
ttgaaggtgataagcctttcaagtttcagtctcatcgtcctactattgttcttct |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14988158 |
ttgaaggtgataagcctttcaagtttcagtctcatcgtcctactattgttcttct |
14988212 |
T |
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