View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_13 (Length: 412)
Name: NF20090_high_13
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 36184089 - 36184473
Alignment:
| Q |
13 |
aatattgagatttcaaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactccaagttaattttcaaaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36184089 |
aatattgagatttcaaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactcaaagttaattttcaaaat |
36184188 |
T |
|
| Q |
113 |
tctaaacttaactttgaaaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaacc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184189 |
tctaaacttaactttgaaaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaacc |
36184288 |
T |
|
| Q |
213 |
attttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgta |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184289 |
attttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgta |
36184388 |
T |
|
| Q |
313 |
ttcaagtgtaactaacaagaaacaaacaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattatt |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184389 |
ttcaagtgtaactaacaagaaacaaacaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattatt |
36184473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 36196352 - 36196637
Alignment:
| Q |
13 |
aatattgagatttcaaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactccaagttaattttcaaaat |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| || |||| |
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| T |
36196352 |
aatattgagatttcaaacatagtacaaaagcctttacaatt-atacaattatttatcaggtcaaag-catagccttgcactccaagttaatattaaaaaa |
36196449 |
T |
|
| Q |
113 |
tctaaacttaactttgaaaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaacc |
212 |
Q |
| |
|
|||||| | || |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
36196450 |
tctaaattaaaatttgaaaataaaacagctacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaacc |
36196549 |
T |
|
| Q |
213 |
attttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
300 |
Q |
| |
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|||||||| |||| ||| | |||||| |||||||| |||||||| ||| ||||||||||||||||||| | |||||||||||||| |
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| T |
36196550 |
attttatcaaagaagaaagtgaattcctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccata |
36196637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 36209514 - 36209761
Alignment:
| Q |
53 |
ttatacaattatttatccggtcaaaaacatagccttacactccaagttaattttcaaaattctaaacttaactttgaaaataaaacagttacaatatgtt |
152 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||| | ||||||||||||||||||| ||||||||||| |
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| T |
36209514 |
ttatacaattatttatcaggtcaaag-catagccttgcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgtt |
36209612 |
T |
|
| Q |
153 |
atactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccctcctcccttga |
251 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||| |||||||| | |
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| T |
36209613 |
atactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttccctcccttta |
36209712 |
T |
|
| Q |
252 |
aagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
300 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
36209713 |
aagaaccacagaggaaattactgcaagaaacaagggaaatcttaccata |
36209761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 36188033 - 36188319
Alignment:
| Q |
15 |
tattgagatttcaaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactccaagttaattttcaaaattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||| |
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|
| T |
36188033 |
tattgagatttcaaacatagtacaaaagacttcagaatt-atacaattatttatcaggtcaaac-catagccttgcactccaagttaatattcaaaattc |
36188130 |
T |
|
| Q |
115 |
taaacttaactttgaaaataaaacagttacaatatgttatactatttagcaaa-agtgacatgtt---aacagaaccaaccataccaaacatagttcaaa |
210 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
36188131 |
taaattaaactttgaaaattaaacagttacaatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaa |
36188230 |
T |
|
| Q |
211 |
ccattttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
300 |
Q |
| |
|
||||||||| |||||||| | ||||||| |||||||| ||||| || ||| |||||||||||||||||| ||| |||||||||||||| |
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|
| T |
36188231 |
ccattttattagagaggaaggtgaattcccccctccctttaaagagccacagaggaaattactgcaagaaa-aagggaaatcttaccata |
36188319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 298
Target Start/End: Original strand, 36200331 - 36200545
Alignment:
| Q |
86 |
cttacactccaagttaattttcaaaattctaaacttaa-ctttgaaaataaaacagttacaatatgttatactatttagcaaa-agtgacatgttaacag |
183 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||| | || ||||||||| ||||||| |||||||| ||| | |||||||||| | ||| ||||||||| |
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|
| T |
36200331 |
cttacactccaaattaatatccaaaattctaaaatgaaactttgaaaacaaaacagctacaatatattacatcatttagcaaacaacgacttgttaacag |
36200430 |
T |
|
| Q |
184 |
aaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaaca |
283 |
Q |
| |
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||| ||||||||||||| ||||||||| ||||| || |||||||| | |||||| ||| ||| ||||| || ||||| || ||||||||||| |
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|
| T |
36200431 |
aactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaaccacataggaaaataatgcaagaaaca |
36200530 |
T |
|
| Q |
284 |
agtgaaatcttacca |
298 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
36200531 |
agagaaatcttacca |
36200545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 36212000 - 36212063
Alignment:
| Q |
76 |
aaaacatagccttacactccaagttaattttcaaaattctaaacttaactttgaaaataaaaca |
139 |
Q |
| |
|
||||||||||||||||||| | | ||| | |||||||||||| | |||||||||||||||||| |
|
|
| T |
36212000 |
aaaacatagccttacactctagatcaatatccaaaattctaaattaaactttgaaaataaaaca |
36212063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 36201749 - 36201857
Alignment:
| Q |
26 |
caaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactccaagttaattttcaaaattctaaacttaact |
125 |
Q |
| |
|
||||||| |||||||||||| ||||| ||| | ||||||||||| ||| ||||||||||||| ||||| || | | | | |||||||||||| |||| |
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|
| T |
36201749 |
caaacatcgtacaaaagcctatacaa-ttacaaaattatttatctggt-taaaacatagccttgcactcaaaatcattatccaaaattctaaatgaaact |
36201846 |
T |
|
| Q |
126 |
ttgaaaataaa |
136 |
Q |
| |
|
||||||||||| |
|
|
| T |
36201847 |
ttgaaaataaa |
36201857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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