View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_18 (Length: 379)
Name: NF20090_high_18
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 49991700 - 49991353
Alignment:
| Q |
17 |
caccaatctctaacattgtggtttttgtatagattacatcttaccaaaaatcaagaatcttatttaaattttaaaaaataaaatagaagacatgcgagac |
116 |
Q |
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| T |
49991700 |
caccaatctctaacattgtggtttttgtatagattacatcttaccaaaaatcaagaatcttatttaaattttaaaaaataaaatagaagacatgcgagac |
49991601 |
T |
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| Q |
117 |
aaggatcttttcttgcatctatgcttcccaataagcgggacacaaactatatttccatccctcaataaagaaatgcagtcatattctcaatgaaacgtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49991600 |
aaggatcttttcttgcatctatgcttcccaataagcgggacacaaactatatttccatccctcaataaagaaatgcagtcatattctcaatgaaacgtgt |
49991501 |
T |
|
| Q |
217 |
caagattttgcaaattgatgtacctttacaaatctaaataattgataaagtttactgcatatattctttcttttatgaaattttttaaaaattcctcttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49991500 |
caagattttgcaaattgatgtacctttacaaatctaaataattgataaagtttactgcatatattctttcttttatgaaaaaatttaaaaattcctcttg |
49991401 |
T |
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| Q |
317 |
acgtggttttaccatccatcaccaataaggaatgagttttagcctatg |
364 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49991400 |
acgtgggtttaccatccatcaccaataaggaatgagttttagcctatg |
49991353 |
T |
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