View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_2 (Length: 586)
Name: NF20090_high_2
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 22 - 586
Target Start/End: Original strand, 8795591 - 8796155
Alignment:
| Q |
22 |
catgttaattgatccatatcataaatctaaaatccactttgcacttgtccccaggaaagtacttcagctctttggagctactctactatctgcattttgc |
121 |
Q |
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| T |
8795591 |
catgttaattgatccatatcataaatctaaaatccactttgcacttgtccccaggaaagtacttcagctctttggagctactctactatctgcattttgc |
8795690 |
T |
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| Q |
122 |
actccaattaggaaagaaacttgtgagtatatacctcgcaattaccacttctgggaacaagtgcagaagaaaccctaattcattggttattatttacaaa |
221 |
Q |
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| T |
8795691 |
actccaattaggaaagaaacttgtgagtatatacctcgcaattaccacttctgggaacaagtgcagaagaaaccctaattcattggttattatttacaaa |
8795790 |
T |
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| Q |
222 |
acctaaattcacccaccaatcttcctgttccgaagtcctccaaattttggattcattacaaagtagattctttaataatgttaatatattaagaacacta |
321 |
Q |
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| T |
8795791 |
acctaaattcacccaccaatcttcctgttccgaagtcctccaatttttggattcattacaaagtagattctttaataatgttaatatattaagaacacta |
8795890 |
T |
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| Q |
322 |
caaaagccagtgaaatctgagagtttctgtgacctcatcaaaagggaaattttaagaaaaagctatatgtgtgatgatgcaagtcttatagttcccataa |
421 |
Q |
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| T |
8795891 |
caaaagccagtgaaatctgagagtttctgtgacctcatcaaaagggaaattttaagaaaaagctatatgtgtgatgatgcaagtcttatagttcccataa |
8795990 |
T |
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| Q |
422 |
aaacaatactatcaagcacacacaaaagaaaagacgaatttaacaagatacctatatagttaagttccttcaatgcaccaacaccaatgaaatatatatg |
521 |
Q |
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| T |
8795991 |
aaacaatactatcaagcacacacacaagaaaagacgaatttaacaagatacctatatagttaagttccttcaatgcaccaacaccaatgaaatatatatg |
8796090 |
T |
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| Q |
522 |
tactactatacatcaccatctacctttatttttagacaaaaaacgcatgagttaagggcaccttt |
586 |
Q |
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| T |
8796091 |
tactactatacatcaccatctacctttatttttagacaaaaaacgcatgagttaagggcaccttt |
8796155 |
T |
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