View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_21 (Length: 360)
Name: NF20090_high_21
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 3922224 - 3922565
Alignment:
| Q |
1 |
aaatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922224 |
aaatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctacca |
3922323 |
T |
|
| Q |
101 |
atgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatcataatttgttgtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3922324 |
atgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcataatttgttgtat |
3922423 |
T |
|
| Q |
201 |
cagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaagg |
300 |
Q |
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| T |
3922424 |
cagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaagg |
3922523 |
T |
|
| Q |
301 |
tatcattggctctggatacaaaagcacacataagcaaaaaat |
342 |
Q |
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| T |
3922524 |
tatcattggctctggatacaaaagcacacataagcaaaaaat |
3922565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 34958404 - 34958076
Alignment:
| Q |
19 |
tggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctaccaatgactctcaacctatca |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
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| Q |
119 |
tacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatcataatttgttgtatcagcaccaga-----taa |
213 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataatataa |
34958205 |
T |
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| Q |
214 |
tgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958204 |
tgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
34958105 |
T |
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| Q |
314 |
ggatacaaaagcacacataagcaaaaaat |
342 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34958104 |
ggatacaaaagcacacataagcaaaaaat |
34958076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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