View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_22 (Length: 354)
Name: NF20090_high_22
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_22 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 5269937 - 5269599
Alignment:
| Q |
17 |
aacatctaacacaaaaactaagaatttaaggcccaa-tttaggcaatgactggtgaacgggaacaaatagagtttgtagctatcttgcagtcagatgcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5269937 |
aacatctaacacaaaaactaagaatttaaggcccaactttaggcaatgactggtgaacgggaacaaatagagtttgtagctagcttgcagtcagatgcaa |
5269838 |
T |
|
| Q |
116 |
tgaactgaacatgttcctccatcactattttgttaatcaacttcagcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgac |
215 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
5269837 |
tgaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaaccatgaatttcagccttaac |
5269738 |
T |
|
| Q |
216 |
aagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269737 |
aagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
5269638 |
T |
|
| Q |
316 |
gcaccatcaccaaggtagataaacctatgcttctccact |
354 |
Q |
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||||||||||||||||||||||| || | |||||||||| |
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| T |
5269637 |
gcaccatcaccaaggtagataaatctcttcttctccact |
5269599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 5275808 - 5276050
Alignment:
| Q |
99 |
cttgcagtcagatgcaatgaactgaacatgttcctccatcactattttgttaatcaacttcagcaaaacttgttccaattcttctccatcactccaacca |
198 |
Q |
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|||||| || |||| ||| || ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5275808 |
cttgcaatctgatgaaataaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaacca |
5275907 |
T |
|
| Q |
199 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5275908 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaaac |
5276007 |
T |
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| Q |
299 |
tagggcaatagtccccagcaccatcaccaaggtagataaacct |
341 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5276008 |
tagggcaatagtcccctgcaccatcaccaaggtagataaacct |
5276050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 5271898 - 5272061
Alignment:
| Q |
178 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
277 |
Q |
| |
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||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
5271898 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagt |
5271997 |
T |
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| Q |
278 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
341 |
Q |
| |
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|||| ||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
5271998 |
ctctctctttaaacctcaagctagggcaataatctccagcaccatcaccaaggtagataaacct |
5272061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 178 - 341
Target Start/End: Complemental strand, 5251931 - 5251768
Alignment:
| Q |
178 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
277 |
Q |
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||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || | |
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| T |
5251931 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcatgaaat |
5251832 |
T |
|
| Q |
278 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
341 |
Q |
| |
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|| | ||||||||||| || ||||| ||||| || ||| ||||||||||||||||||||||| |
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| T |
5251831 |
ctttctctctaagccttaaactaggacaataatctccaatgccatcaccaaggtagataaacct |
5251768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 14945163 - 14945041
Alignment:
| Q |
216 |
aagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
315 |
Q |
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|||| |||| ||||| |||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
14945163 |
aagtaaagggtcttttcatatcaagtcccatactggaaagttcttccttgacataacaaagtctctttctctaagtctcaaactagggcaatagtctcca |
14945064 |
T |
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| Q |
316 |
gcaccatcaccaaggtagataaa |
338 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
14945063 |
ataccatcaccatggtagataaa |
14945041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 178 - 338
Target Start/End: Original strand, 26314296 - 26314456
Alignment:
| Q |
178 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
277 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| |
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| T |
26314296 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaagtcccatacaggaaaattcttccttggcatcacaaagt |
26314395 |
T |
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| Q |
278 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
338 |
Q |
| |
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|| ||||| |||| || ||||| || ||||| || ||| |||||||||||| |||||||| |
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|
| T |
26314396 |
ctttttctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
26314456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 43109245 - 43109408
Alignment:
| Q |
178 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
277 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||| |
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| T |
43109245 |
tcttcaccatcactccattcataaattttagctttaacaagtgaaggatctttgcaaattaaatcccacacaggaaaattcttccttggcatcacaaagt |
43109344 |
T |
|
| Q |
278 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
341 |
Q |
| |
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|| ||||| ||||||||||||| || ||||| || ||| |||||| ||||| ||||||||||| |
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| T |
43109345 |
ctttttctttaagcctcaagcttggacaataatctccactaccatccccaagatagataaacct |
43109408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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