View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20090_high_23 (Length: 353)
Name: NF20090_high_23
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 30743301 - 30743630
Alignment:
| Q |
19 |
taagcagaaatagtacaaagagaaattgaaggaaaaagaagcactagtactattgatatcagaggcaacagtaaaaacttaagaagcataataatcaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
30743301 |
taagcagaaatagtacaaagagaaattgaaggaaaaataagcactagtactattgatatcagaggcagcagtaaaaacttaagaagcataataataaaaa |
30743400 |
T |
|
| Q |
119 |
agagtaaa-attgcgttttagttaaataattcttcccaccgataatagtcattgaacctattttttatcgatcgcgttttagtgactttagtgcgtcaaa |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30743401 |
agagtaaagattgtgttttagttaaataattcttcccaccgataatagtcattgaacctattttttatcgatcgcgttttagtgactttagtgcgtcaaa |
30743500 |
T |
|
| Q |
218 |
gtgaacat--tgcgagtcatatgactttgacgc------gtgactgaaacataattattttttataccacatattcaagtgaatatttcatgtaagactt |
309 |
Q |
| |
|
|||| || | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
30743501 |
atgaatattatataagtcatatgactttgacgcattaaagtgactgaaacacgattattttttataccacatattcaagtgaatattttatgtcagactt |
30743600 |
T |
|
| Q |
310 |
tgcattctctgtttcaagaagtttcatctc |
339 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |
|
|
| T |
30743601 |
tgcattctctgtttcaaggagttttatctc |
30743630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University