View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_36 (Length: 319)
Name: NF20090_high_36
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 18215579 - 18215290
Alignment:
| Q |
14 |
gagatgaaaaaacactttatctaacagtcatttagtcaattggccattacattccaaagtccaaactataaacttgagtcttgagctcctattagtgagt |
113 |
Q |
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| T |
18215579 |
gagatgaaaaaacactttctctaacagtcataaagtcaattggccattacattccaaagtccaaactataaacttgagtcttgagctcctatcagtgagt |
18215480 |
T |
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| Q |
114 |
ccactaccagtataatcgtagctgtaacttttcgtgaatccaggagtataagaaactcatagccatccatcatctactttgcactgtacaagtctcttct |
213 |
Q |
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| T |
18215479 |
ccagaaccagtataatcgtagctgtaacttttcgtgaatccaggagtataaggaactcatagccatccatcatctactttgcactgtacaagtctcttct |
18215380 |
T |
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| Q |
214 |
ttattatcagttgcagcacacaaggccttccaaacatgaactagcattttaattggtggtctcatattctagcaaacaaatttatagatt |
303 |
Q |
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| T |
18215379 |
ttattatcagttgcagcacacaaagccttccaaacatgaactagcattttaattggtggtctcatattctagcaaacaaatttatagatt |
18215290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 296
Target Start/End: Complemental strand, 600551 - 600400
Alignment:
| Q |
147 |
gtgaatccaggagtat-aagaaactcatagccatccatcatctactttgcac-tgtacaagtctcttctttattatcagttgcagcacacaaggccttcc |
244 |
Q |
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||||||||| |||||| ||| |||||||| | |||||||| |||||| ||| | ||||||| || ||||||||||||| ||||||||||| ||||||| |
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| T |
600551 |
gtgaatccaagagtattaaggaactcatacctatccatcacctacttggcatgtatacaagtttcgcctttattatcagtggcagcacacaaagccttcc |
600452 |
T |
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| Q |
245 |
aaacatgaactagcattttaattggtggtctcatattctagcaaacaaattt |
296 |
Q |
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| T |
600451 |
agacatgaaccagcattttaactggtggtcgcaagttctagcaaacaaattt |
600400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 337044 - 337182
Alignment:
| Q |
159 |
gtataagaaactcatagccatccatcatctactttgcac-tgtacaagtctcttctttattatcagttgcagcacacaaggccttccaaacatgaactag |
257 |
Q |
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||||||| |||||||| | |||||||| |||||| ||| | |||||||||| |||||||||||||| ||||||||||| |||||| | ||||| || || |
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| T |
337044 |
gtataaggaactcatacctatccatcacctacttggcatgtatacaagtctcgtctttattatcagtagcagcacacaaagccttctagacatggaccag |
337143 |
T |
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| Q |
258 |
cattttaattggtggtctcatattctagcaaacaaattt |
296 |
Q |
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|||||||| |||||||| || ||||||||||| ||||| |
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| T |
337144 |
cattttaactggtggtcgcaagttctagcaaacgaattt |
337182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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