View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_41 (Length: 287)
Name: NF20090_high_41
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_41 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 3763114 - 3762965
Alignment:
| Q |
138 |
taataattgaccctaccccactccattttatattcctattcctatatatgcttcacttcattaagcagataacaaagttagcatcacaatttcacaattt |
237 |
Q |
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| T |
3763114 |
taataattgaccctatcccactccattttattttcctattcctatatatgcttcacttgactaagcagataacaaagttagcatcacattttcacaaact |
3763015 |
T |
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| Q |
238 |
ccaccaaacaatgtcttccaaacatttcctcactttgttcttcttccttc |
287 |
Q |
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| T |
3763014 |
ccaccaaattatgtcttccaaacatttcctcactttgttcttcttccttc |
3762965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 3763747 - 3763683
Alignment:
| Q |
19 |
catgagccaacaaccacgccacacacccattctgattcagccattgaatggaaccaaatgatata |
83 |
Q |
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| T |
3763747 |
catgagccaacaaccacgccatacacccattctgattcagccattgaatggaaccaaatgatata |
3763683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 3777079 - 3777037
Alignment:
| Q |
245 |
acaatgtcttccaaacatttcctcactttgttcttcttccttc |
287 |
Q |
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| T |
3777079 |
acaatgtcttccaaacatttcctcactttgttcttcttccttc |
3777037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 3781395 - 3781353
Alignment:
| Q |
245 |
acaatgtcttccaaacatttcctcactttgttcttcttccttc |
287 |
Q |
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| T |
3781395 |
acaatgccttcccaacatttcctcactttgttcttcttccttc |
3781353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 3775659 - 3775566
Alignment:
| Q |
19 |
catgagccaacaaccacgccacacacccattctgattcagccat-tga----atggaaccaaatgata--tattcctatatatgctttttctca |
105 |
Q |
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| T |
3775659 |
catgagccaacaactacgccacacacctattcagattcagccatgtgatgccatggaaccaaatgatatgttttcctatctatgttttttctca |
3775566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 3763563 - 3763523
Alignment:
| Q |
103 |
tcaatgaccagttctctttttatatttttgatccataataa |
143 |
Q |
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| T |
3763563 |
tcaatgatcacttctctttttatatttttgatccataataa |
3763523 |
T |
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