View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_high_53 (Length: 253)

Name: NF20090_high_53
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_high_53
NF20090_high_53
[»] chr8 (10 HSPs)
chr8 (16-253)||(12031585-12031822)
chr8 (16-201)||(15978249-15978431)
chr8 (16-151)||(12052736-12052871)
chr8 (16-163)||(19123850-19123997)
chr8 (16-163)||(19109836-19109983)
chr8 (16-152)||(12059584-12059720)
chr8 (16-137)||(19144869-19144990)
chr8 (18-74)||(12041429-12041485)
chr8 (73-132)||(12139572-12139631)
chr8 (73-122)||(12028886-12028935)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 12031585 - 12031822
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  12031585 aaaatcatttaatacttccatgaaatatatttaaaatattacatatcctgaatgcaagaaacttaataaagcattcaacaaaacaatttaatacttccat 12031684  T
Q  116 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttgtttctcttgtgtttatatgattttcagatttgtaaatgaatttaaagtaggga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12031685 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttgtttctcttgtgtttatatgattttcagatttgtaaatgaatttaaagtaggga 12031784  T
Q  216 aattcacacaagcttttatcttgttgcataattgacaa 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12031785 aattcacacaagcttttatcttgttgcataattgacaa 12031822  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 15978431 - 15978249
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||  ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |  ||||||||| ||    
T  15978431 aaaatcattcgatacttccatgcaatatatttaaaatattacacatcctgaatgcaagaaacttaataaagcattcaacaaaaccatttaatacttcaat 15978332  T
Q  116 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttgtttctcttgtgtttatatgattttcagatttgtaaatga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| || ||||||||||||    
T  15978331 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttg-ttctct--tgtttatatgatttccatatttgtaaatga 15978249  T

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Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 12052736 - 12052871
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  12052736 aaaatcatttaatacttccaagaaatatatttaaaatattacacatcctgaatgcaagaaacttaataaagcattcaacaaaacaatttaatacttccat 12052835  T
Q  116 gaaacatatttataattctcaaatttgtttctcttg 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  12052836 gaaacatatttataattctcaaatttgtttctcttg 12052871  T

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Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 19123997 - 19123850
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  ||||||||| ||    
T  19123997 aaaatcatttgatacttccatgaaatatatttaaaatattacacatcctgaatgcaagaaacataataaagcattcaacaaaaccatttaatacttcaat 19123898  T
Q  116 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttgt 163  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19123897 gaatcatatttataattctcaaatttgtttctcttgtttcaaatttgt 19123850  T

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Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 19109983 - 19109836
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    ||||||| || |||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |  ||||||||| ||    
T  19109983 aaaatcaattgatactttcatgaaatacatttaaaatattacacatcctgaatgcaagaaacttaataaagcattcaacaaaaccacttaatacttcaat 19109884  T
Q  116 gaaacatatttataattctcaaatttgtttctcttgtttcaaatttgt 163  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  19109883 gaaacatatttataattctcaaatttgtttgtcttgtttcaaatttgt 19109836  T

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Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 12059584 - 12059720
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||| |||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| |  ||||||||||||    
T  12059584 aaaatcatttgatacttccattaaatatatttaaaatatcacacatcctgaatgcaagaaacttaataaaccattcaacaaaaccatataatacttccat 12059683  T
Q  116 gaaacatatttataattctcaaatttgtttctcttgt 152  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  12059684 gaaacatatttataattctcaaatttgattctattgt 12059720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 19144990 - 19144869
Alignment:
Q  16 aaaatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaagaaacttaataaagcattcaacaaaacaaagtaatacttccat 115  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  ||||||||| ||    
T  19144990 aaaatcatttgatacttccatgaaatatatttaaaatattacacatcctgaatgcaagaaacataataaagcattcaacaaaaccatttaatacttcaat 19144891  T
Q  116 gaaacatatttataattctcaa 137  Q
    ||| | ||||||||||||||||    
T  19144890 gaatcgtatttataattctcaa 19144869  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 12041429 - 12041485
Alignment:
Q  18 aatcatttaatacttccatgaaatatatttaaaaaattacacatcctgaatgtaaga 74  Q
    |||||||| |||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  12041429 aatcatttgatacttccatcaaatatatttaaaatattagacatcctgaatgcaaga 12041485  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 12139631 - 12139572
Alignment:
Q  73 gaaacttaataaagcattcaacaaaacaaagtaatacttccatgaaacatatttataatt 132  Q
    |||||||||||||||| |||||||||| |  | |||||||||||||||| ||||| ||||    
T  12139631 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaacacatttaaaatt 12139572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 12028886 - 12028935
Alignment:
Q  73 gaaacttaataaagcattcaacaaaacaaagtaatacttccatgaaacat 122  Q
    |||||||||||||||| |||||||||| |  | |||||||||||||||||    
T  12028886 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaacat 12028935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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