View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_high_6 (Length: 465)

Name: NF20090_high_6
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_high_6
NF20090_high_6
[»] chr6 (5 HSPs)
chr6 (180-451)||(33032310-33032582)
chr6 (193-299)||(33050800-33050906)
chr6 (205-305)||(33032186-33032285)
chr6 (16-64)||(33032796-33032844)
chr6 (92-127)||(33032608-33032643)
[»] chr1 (3 HSPs)
chr1 (193-337)||(38903842-38903986)
chr1 (205-305)||(38903516-38903615)
chr1 (203-321)||(38904194-38904312)
[»] chr8 (2 HSPs)
chr8 (205-318)||(43521995-43522107)
chr8 (266-306)||(43522198-43522238)
[»] chr4 (2 HSPs)
chr4 (205-321)||(53017180-53017295)
chr4 (205-318)||(53017377-53017492)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 180 - 451
Target Start/End: Complemental strand, 33032582 - 33032310
Alignment:
Q  180 gttgatagattgtgaataattagacctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032582 gttgatagattgtgaataattagacctcagacatccaaggaaggatacagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccac 33032483  T
Q  280 tgcgaatgttttgagaaacaagccttaatattatcatcattggtcatttacaatcaaaatcaaaatgatcacaacatgaatataagactcatacacaaga 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |    
T  33032482 tgcgaatgttttgagaaacaagccttaatattatcatcattggtcatttacaatcaaaatcaaaaagatcacaacatgaatataagactgatacacaa-a 33032384  T
Q  380 tagtaagctaacat--agaactttgcagaaacaaattgcaatcacaaacccttattacaacagagaatcaaaca 451  Q
    ||||||||||||||    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  33032383 tagtaagctaacatgatcaactttgcagaaacaaattgtaatcacaaacccttatttcaacagagaattaaaca 33032310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 33050906 - 33050800
Alignment:
Q  193 gaataattagacctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 292  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33050906 gaataatttgacctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 33050807  T
Q  293 agaaaca 299  Q
    |||||||    
T  33050806 agaaaca 33050800  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 33032285 - 33032186
Alignment:
Q  205 ctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 304  Q
    |||||||||||||||||||||| | |||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33032285 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 33032187  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33032844 - 33032796
Alignment:
Q  16 atacaaaattcagagtaatatgtaattgatccgatcaaatttctatttt 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33032844 atacaaaattcagagtaatatgtaattgatcagatcaaatttctatttt 33032796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 33032643 - 33032608
Alignment:
Q  92 taaataaagttgtgtaacagacaaaattataaatca 127  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33032643 taaataaagttgtgtaacagacaaaattatacatca 33032608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 38903986 - 38903842
Alignment:
Q  193 gaataattagacctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 292  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38903986 gaataatttgacctcagacatccaaggaaggaaatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgttttg 38903887  T
Q  293 agaaacaagccttaatattatcatcattggtcatttacaatcaaa 337  Q
    ||||||||||||||   |||||||||||||||||||| |||||||    
T  38903886 agaaacaagccttagatttatcatcattggtcatttataatcaaa 38903842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 38903615 - 38903516
Alignment:
Q  205 ctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 304  Q
    |||||||||||||||||||||| | ||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903615 ctcagacatccaaggaaggataaaacagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 38903517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 38904312 - 38904194
Alignment:
Q  203 acctcagacatccaaggaaggata-tagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaag 301  Q
    |||||||||||||||||||||| | || | |||||| |||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  38904312 acctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaa-ggcgaaagctattaggcagccactgcgaatgttttgagaaacaag 38904214  T
Q  302 ccttaatattatcatcattg 321  Q
    |||||   ||||||||||||    
T  38904213 ccttagatttatcatcattg 38904194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 205 - 318
Target Start/End: Complemental strand, 43522107 - 43521995
Alignment:
Q  205 ctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  43522107 ctcagacatccaaggaaggataaagcagcattaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 43522009  T
Q  305 taatattatcatca 318  Q
    |||| |||||||||    
T  43522008 taatgttatcatca 43521995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 43522238 - 43522198
Alignment:
Q  266 tcttaggcggccactgcgaatgttttgagaaacaagcctta 306  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  43522238 tcttaggcggccaatgcgaatgttttgagaaacaagcctta 43522198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 53017180 - 53017295
Alignment:
Q  205 ctcagacatccaaggaaggatatagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 304  Q
    |||||||||||||||||||||| ||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53017180 ctcagacatccaaggaaggataaagcagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 53017278  T
Q  305 taatattatcatcattg 321  Q
    |   |||||||||||||    
T  53017279 ttggattatcatcattg 53017295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 53017377 - 53017492
Alignment:
Q  205 ctcagacatccaaggaaggatatag---cagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaag 301  Q
    |||||||||||||||||||| | |    |||||||| |||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  53017377 ctcagacatccaaggaaggaaaaaaaaacagcattagctctcaagcctggcgaa-ggcgaaagctcttggtcggccactgcgaatgttttgagaaacaag 53017475  T
Q  302 ccttaatattatcatca 318  Q
    |||||||| ||||||||    
T  53017476 ccttaataatatcatca 53017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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