View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_high_60 (Length: 232)

Name: NF20090_high_60
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_high_60
NF20090_high_60
[»] chr5 (2 HSPs)
chr5 (20-215)||(14723945-14724139)
chr5 (102-149)||(21740169-21740216)
[»] chr2 (6 HSPs)
chr2 (19-206)||(3981895-3982082)
chr2 (82-191)||(13911843-13911952)
chr2 (106-200)||(10421237-10421331)
chr2 (109-200)||(26510295-26510386)
chr2 (82-191)||(43680013-43680121)
chr2 (74-149)||(15521115-15521190)
[»] chr4 (3 HSPs)
chr4 (19-206)||(45421363-45421550)
chr4 (82-200)||(53708361-53708479)
chr4 (26-80)||(38836666-38836720)
[»] chr1 (2 HSPs)
chr1 (19-182)||(47142469-47142632)
chr1 (109-200)||(5212879-5212969)
[»] scaffold0015 (1 HSPs)
scaffold0015 (53-218)||(52276-52441)
[»] chr7 (4 HSPs)
chr7 (82-200)||(11567754-11567872)
chr7 (82-191)||(18807261-18807370)
chr7 (82-200)||(5634813-5634931)
chr7 (88-200)||(23834612-23834724)
[»] chr6 (1 HSPs)
chr6 (82-200)||(19110543-19110661)
[»] chr8 (1 HSPs)
chr8 (82-200)||(26381523-26381641)
[»] chr3 (2 HSPs)
chr3 (109-189)||(45779540-45779620)
chr3 (82-200)||(43640275-43640393)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 14724139 - 14723945
Alignment:
Q  20 actctgtagcatcatgttgtgcagatagaaagctgtcaacaactctttccatgtcaagctcgaaatcaataggtccaagttaaagatcatgaacctattc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14724139 actctgtagcatcatgttgtgcagatagaaagctgtcaacaactcttttcgcgtcaagctcgaaatcaataggtccaagttaaagatcatgaacccattc 14724040  T
Q  120 taaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaaggaacccaaatcatc 215  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14724039 taaagcagatagtaaaccaagag-ttctcccacatgaacatcacaaagaggactaatccattcagttttagccaacaaaaaggaacccaaatcatc 14723945  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 21740216 - 21740169
Alignment:
Q  102 aagatcatgaacctattctaaagcagatagtaaaccaagagcttctcc 149  Q
    ||||||||||||| |||||||||| || ||||||||||| ||||||||    
T  21740216 aagatcatgaacccattctaaagccgaaagtaaaccaagtgcttctcc 21740169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 3981895 - 3982082
Alignment:
Q  19 aactctgtagcatcatgttgtgcagatagaaagctgtcaacaactctttccatgtcaagctcgaaatcaataggtccaagttaaagatcatgaacctatt 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| |  |||||||||||||||||| |||||||||| ||||  ||||||| |||    
T  3981895 aactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgcgtcaagctcgaaatcaattggtccaagttgaagaagatgaacccatt 3981994  T
Q  119 ctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaaggaacc 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  3981995 ctaaagcagatagtaaaccaagagcttctcccacatgaacatcacaaagaggactaatccattcggttctagccaacacaaaggaacc 3982082  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 13911843 - 13911952
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  13911843 aaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaaccatt 13911942  T
Q  182 cagttttagc 191  Q
    ||||||||||    
T  13911943 cagttttagc 13911952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 10421237 - 10421331
Alignment:
Q  106 tcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaa 200  Q
    ||||||||| |||||||||| || ||||||||||| |||||||| | || ||| ||||| |  | ||||||||| ||||||||||| || |||||    
T  10421237 tcatgaacccattctaaagccgaaagtaaaccaagtgcttctcctatatgaacttcacataacgtactaatccaatcagttttagctaaaacaaa 10421331  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 26510295 - 26510386
Alignment:
Q  109 tgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaa 200  Q
    |||||| |||||| |||||||| ||||||||||| |||||| | || ||| ||||| |  ||||||| ||||| ||||||||| || |||||    
T  26510295 tgaacccattctagagcagataataaaccaagagtttctcctatatgaacttcacacatcggactaaaccattaagttttagctaagacaaa 26510386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 43680121 - 43680013
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||| ||| |||||||||||||||| ||  || ||| |||||||  | ||||| |||||    
T  43680121 aaatccataggaccaagattaagctcgtgaacccattctagagcatataataaaccaagagcttct-ccttatgaacttcacaaatcgaactaaaccatt 43680023  T
Q  182 cagttttagc 191  Q
    ||||||||||    
T  43680022 cagttttagc 43680013  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 15521190 - 15521115
Alignment:
Q  74 caagctcgaaatcaataggtcc-aagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcc 149  Q
    ||||||| ||||||| || ||| ||||||| | ||||||||| ||||||||||||||| ||  ||||||||||||||    
T  15521190 caagctcaaaatcaacagatcccaagttaa-gttcatgaacccattctaaagcagataatattccaagagcttctcc 15521115  T

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Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 45421550 - 45421363
Alignment:
Q  19 aactctgtagcatcatgttgtgcagatagaaagctgtcaacaactctttccatgtcaagctcgaaatcaataggtccaagttaaagatcatgaacctatt 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| |  ||||||||||||||||||| ||||||||| ||||  ||||||| |||    
T  45421550 aactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgcgtcaagctcgaaatcaatatgtccaagttgaagaagatgaacccatt 45421451  T
Q  119 ctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaaggaacc 206  Q
    |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  45421450 ctaaagcatatagtaaacctagagcttctcccacatgaacatcacaaagaggactaatcgattcagttctagccaacacaaaggaacc 45421363  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 53708361 - 53708479
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| ||| || |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  53708361 aaatccataggaccaagattaagctcgtgaacccattgtagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaaccatt 53708460  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  53708461 cagttttagctaagacaaa 53708479  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 38836720 - 38836666
Alignment:
Q  26 tagcatcatgttgtgcagatagaaagctgtcaacaactctttccatgtcaagctc 80  Q
    |||||||||||||||| ||||  ||||||||||||||||||| |  |||||||||    
T  38836720 tagcatcatgttgtgccgataagaagctgtcaacaactcttttcgcgtcaagctc 38836666  T

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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 47142632 - 47142469
Alignment:
Q  19 aactctgtagcatcatgttgtgcagatagaaagctgtcaacaactctttccatgtcaagctcgaaatcaataggtccaagttaaagatcatgaacctatt 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| |   |||||||| ||||||||||||||||||| ||||  | ||||| |||    
T  47142632 aactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgcatcaagctcaaaatcaataggtccaagttgaagaagacgaacccatt 47142533  T
Q  119 ctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattc 182  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47142532 ctaaagcagatagtaaaccaagagcttctcccacatgaacatcacaaaaaggactaatccattc 47142469  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 5212969 - 5212879
Alignment:
Q  109 tgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttttagccaacacaaa 200  Q
    |||||| |||||| |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| ||||||||||||||| || |||||    
T  5212969 tgaacccattctagagcagata-taaaccaagagcttctcctatatgaacttcacatatcggactaaaccattcagttttagctaagacaaa 5212879  T

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Target: scaffold0015 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 52276 - 52441
Alignment:
Q  53 tgtcaacaactctttccatgtcaagctcgaaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccac 152  Q
    ||||||||||||||| |   ||||||||||| |||||||||| ||| | ||| |  |||||| |||||||||| |||| |||||| |||| ||| || ||    
T  52276 tgtcaacaactcttttcgcatcaagctcgaagtcaataggtctaagctgaagtttgtgaacccattctaaagccgataataaaccgagagtttccccaac 52375  T
Q  153 ataaacatcacaaagaggactaatccattcagttttagccaacacaaaggaacccaaatcatctct 218  Q
    || ||| ||||| ||||| || ||||||||||||||||| || ||||||| |||| | ||||||||    
T  52376 atgaacgtcacatagagggctgatccattcagttttagctaatacaaaggtacccgagtcatctct 52441  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 11567754 - 11567872
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  11567754 aaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaaccatt 11567853  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  11567854 cagttttagctaagacaaa 11567872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 18807370 - 18807261
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||||||| |||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  18807370 aaatccataggaccaaggttaagctcgtgaacccattctaaagcggataataaaccaagagcttctcctatatgaacttcacataacggactaaaccatt 18807271  T
Q  182 cagttttagc 191  Q
    ||||||||||    
T  18807270 cagttttagc 18807261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 5634931 - 5634813
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | |||||| |||||| ||| || |||||||| |||||||| | ||||||| | || ||| ||||| |  ||||||| |||||    
T  5634931 aaatccataggaccaagattaagatcgtgaacccattatagagcagataataaaccaaaaacttctcctatatgaacttcacatatcggactaaaccatt 5634832  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  5634831 cagttttagctaagacaaa 5634813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 23834724 - 23834612
Alignment:
Q  88 ataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagttt 187  Q
    ||||| ||||| | ||| || |||||| |||||| |||||||| |||||||||||||| ||  | || ||| ||||| |  ||||||| |||||||||||    
T  23834724 ataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttttcgtatatgaacttcacatatcggactaaaccattcagttt 23834625  T
Q  188 tagccaacacaaa 200  Q
    |||| || |||||    
T  23834624 tagctaagacaaa 23834612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 19110543 - 19110661
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  19110543 aaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaaccatt 19110642  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  19110643 cagttttagctaagacaaa 19110661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 26381523 - 26381641
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||||||| |||| ||||||||||||| | || ||| ||||| |  ||||||| |||||    
T  26381523 aaatccataggaccaagattaagctcgtgaacccattctagagcagataataaatcaagagcttctcctatatgaacttcacatatcggactaaaccatt 26381622  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  26381623 cagttttagctaagacaaa 26381641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 45779620 - 45779540
Alignment:
Q  109 tgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccattcagtttta 189  Q
    |||||| |||||| |||||||| |||||||||||||||||| | || ||| ||||| |  ||||||| |||||||||||||    
T  45779620 tgaacccattctagagcagataataaaccaagagcttctcctatatgaacttcacatatcggactaaaccattcagtttta 45779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 43640393 - 43640275
Alignment:
Q  82 aaatcaataggtccaagttaaagatcatgaacctattctaaagcagatagtaaaccaagagcttctcccacataaacatcacaaagaggactaatccatt 181  Q
    ||||| ||||| ||||| | ||| || |||||| |||||| |||||||| |||||||| | ||||||| | || ||| ||||| |  ||||||| |||||    
T  43640393 aaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaatatcttctcctatatgaacttcacatatcggactaaaccatt 43640294  T
Q  182 cagttttagccaacacaaa 200  Q
    |||||||||| || |||||    
T  43640293 cagttttagctaagacaaa 43640275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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