View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_high_62 (Length: 222)
Name: NF20090_high_62
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_high_62 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1986365 - 1986566
Alignment:
| Q |
1 |
gctcaccatcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaaatatatttcttgggcttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
1986365 |
gctcaccatcccttttcaaacataacaacaaaatcttgtaagtgtctgttgaattatcataaccaaacgcg-aacttgcaaatatttttcttgggcttgg |
1986463 |
T |
|
| Q |
101 |
gatagttgcgaaaagacaccaatgcttaatattttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1986464 |
gatagttgcgaaaagacaccaatgcttcatattttgtccttgtggaaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatc |
1986563 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
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|
| T |
1986564 |
ttg |
1986566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 15572323 - 15572386
Alignment:
| Q |
4 |
caccatcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaa |
67 |
Q |
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|||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
15572323 |
caccatcccttttccaacataacaacaccaccttgtaagtgtcggttgaattatcataaccaaa |
15572386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 13417357 - 13417409
Alignment:
| Q |
35 |
cttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaaatatatt |
88 |
Q |
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| T |
13417357 |
cttgtaagtgtccgttgaattatcataaccaaac-aggaacctgcaaatatatt |
13417409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 12820327 - 12820359
Alignment:
| Q |
35 |
cttgtaagtgtctgttgaattatcataaccaaa |
67 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
12820327 |
cttgtaagtgtcagttgaattatcataaccaaa |
12820359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 6948292 - 6948492
Alignment:
| Q |
6 |
ccatcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaaatatatttcttgggcttgggatag |
105 |
Q |
| |
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|||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||| |
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| T |
6948292 |
ccatccattttcatacataacaacacaaccttgtaagtgtctattgaattatcataaccaaaggcg-aacttgcaaatatttttcttgggctcgggatag |
6948390 |
T |
|
| Q |
106 |
ttgcgaaaagacaccaatgcttaatattttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatcttgta |
205 |
Q |
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|
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
6948391 |
ttgcgaaaagacaccaatgtttcagattttgtccttgtggcaggattccaaaaagagaatgagtgttcatgatactcagcggtgaaagaagaatcttgta |
6948490 |
T |
|
| Q |
206 |
tg |
207 |
Q |
| |
|
|| |
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|
| T |
6948491 |
tg |
6948492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6954926 - 6955124
Alignment:
| Q |
1 |
gctcaccatcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaaatatatttcttgggcttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| |
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| T |
6954926 |
gctcaccatcccttttcaaacataacaacaccatcttgtaagtgtctgttgaattatcataaccaaacgc-gaacttgcagttatttttct---ccttgg |
6955021 |
T |
|
| Q |
101 |
gatagttgcgaaaagacaccaatgcttaatattttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatc |
200 |
Q |
| |
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||| ||||||||||||| ||||||| | | ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||| |
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| T |
6955022 |
cataattgcgaaaagacaataatgcttcagactttgtccttgtggcagggttccaaaaagagaacgagtgctcctgatattcagcagtgaaagaacaatc |
6955121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 6921766 - 6921940
Alignment:
| Q |
7 |
catcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaaatatatttcttgggcttgggatagt |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| | | || ||||||| || |||| ||||||||||||||| |
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| T |
6921766 |
catcccttttcaaacataagaacacaatcttgtaagtgtctattgaaatatcataaccaaatgtg-aagttgcaaacatttttcctgggcttgggatagt |
6921864 |
T |
|
| Q |
107 |
tgcgaaaagacaccaatgcttaatattttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactc |
182 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
6921865 |
tgcgaaaagacaccaatgtttcagattttgtccttgtggcaggattccagaaagagaacgagtgttcgtgatactc |
6921940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 6935621 - 6935824
Alignment:
| Q |
9 |
tcccttttcaaacataacaacacaatcttgtaagtgtctgttgaattatcataaccaaacgcggaacttgcaa------atatatttcttgggcttggga |
102 |
Q |
| |
|
||||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| | ||| |||||| |||| ||| ||| || ||||| |
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| T |
6935621 |
tccctttccaaactgaagaacaccaacttgtaagtgtctgttgaattatcataaccaaaag-tgaagttgcaaacatttatatttttattgagcgtggga |
6935719 |
T |
|
| Q |
103 |
tagttgcgaaaagacaccaatgcttaatattttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatctt |
202 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| | || | | ||||||||| |||||||||||||||| |
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| T |
6935720 |
ttactgcgaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatctt |
6935819 |
T |
|
| Q |
203 |
gtatg |
207 |
Q |
| |
|
||||| |
|
|
| T |
6935820 |
gtatg |
6935824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 6943372 - 6943415
Alignment:
| Q |
24 |
aacaacacaatcttgtaagtgtctgttgaattatcataaccaaa |
67 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||||||| |
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|
| T |
6943372 |
aacaacaccaacttgtaagtgtttgttgaattatcataaccaaa |
6943415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14514398 - 14514331
Alignment:
| Q |
131 |
attttgtccttgtggcaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaa |
198 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||| |||||| || ||||| |||||||||||||||| |
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| T |
14514398 |
atttagtccttgtggcagggttccagaaagagagcgagtggttaatatacttagcagtgaaagaacaa |
14514331 |
T |
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