View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_1 (Length: 754)
Name: NF20090_low_1
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 17 - 719
Target Start/End: Complemental strand, 32984574 - 32983872
Alignment:
| Q |
17 |
atgcattagtcccttaggaaaaaccataatatcaccaagcttaagatctttgacaaaaacttctgtaaggttaataaatccagctgtaactttaccttga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984574 |
atgcattagtcccttaggaaaaaccataatatcaccaagctgaagatctttgacaaaaacttctgtaaggttaataaatccagctgtaactttaccttga |
32984475 |
T |
|
| Q |
117 |
accatgattagtaattcagttgcatcgggatgagtatgcatcggaacagatccatttacaccaatgtctactcttgccgcagagacatcgagtccattga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32984474 |
accatgattagtaattcagttgcatcgggatgagtatgcatcggaacagatccatttacaccaatatctactcttgccgcagagacatcgagtccattga |
32984375 |
T |
|
| Q |
217 |
gacttggtaattcaatgacagatactttggttaattttacattaaattctttgattaagtttccaggtacaaagccagagaacacaaaatcatccactgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32984374 |
gacttggtaattcaatgacagatactttggttaattttacattaaattcgttgattaagtttccaggtacaaagccagagaacacaaaatcatccactgt |
32984275 |
T |
|
| Q |
317 |
tggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagtttgctacacagaaatcattggcagaagaagaaacatgtgaggtatatgat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32984274 |
tggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagtttgctacacagaaatcattggcagaagaagaaacatgtgaggtatatgat |
32984175 |
T |
|
| Q |
417 |
gagaggagaacaaaaaagaaaacaataatgtgattcatcttcatctttgaaaattgaatttgggttatgggaatgtgagaatggcttgtgctacttatat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32984174 |
gagaggagaacaaaaaagaaaacaataatgtgattcatcttcatctttgaaaattgaatttgggttatgggaatgtgagaatggcttgtgctacttatat |
32984075 |
T |
|
| Q |
517 |
agtgatatatattcttactagggcttatagtaggtgtaaaatattgtactagtaatttgatttgatttccttaaagcaatgtaaccttagtaatttttct |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32984074 |
agtgatatatattcttactagggcttatagtaggtgtaaaatattgtactagtaatttgatttgatttccttaaagcaatgtaaccttagtaatttttct |
32983975 |
T |
|
| Q |
617 |
tcattaatttttctctttccatggacacagcacacatacagaaaatctgtttagtttttgtttactattagaaaagggtaaattgtgttgtacaatatat |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32983974 |
tcattaatttttctctttccatggacacagcacacatacagaaaatctgtttagtttttgtttactattagaaaagggtaaattgtgttgtacaatatat |
32983875 |
T |
|
| Q |
717 |
gac |
719 |
Q |
| |
|
||| |
|
|
| T |
32983874 |
gac |
32983872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 719
Target Start/End: Complemental strand, 6521677 - 6520973
Alignment:
| Q |
17 |
atgcattagtcccttaggaaaaaccataatatcaccaagcttaagatctttgacaaaaacttctgtaaggttaataaatccagctgtaactttaccttga |
116 |
Q |
| |
|
||||| |||||| || |||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||| || ||| |||||||| |
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|
| T |
6521677 |
atgcaatagtccttttggaaaaaccataatatcagtaggcttaagatctttgacataaacttctgtaaggttgataaatccagcagtgactctaccttga |
6521578 |
T |
|
| Q |
117 |
accatgattagtaattcagttgcatcgggatgagtatgcatcggaacagatccatttacaccaatgtctactcttgccgcagagacatcgagtccattga |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| | ||| |||||||||| |
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|
| T |
6521577 |
accatgattagtaattcagttgcatcaggatgagtatgcattggaacagatccatttggaccaatgtctactcttgctgcagatatatcaagtccattga |
6521478 |
T |
|
| Q |
217 |
gacttggtaattcaatgacagatactttggttaattttacattaaattctttgattaagtttccaggtacaaagccagagaacacaaaatcatccactgt |
316 |
Q |
| |
|
|||||||||||||| | || ||| |||||| |||||| |||||||| ||||| ||||| |||||||| |||||||||| ||||| ||||||| ||| || |
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|
| T |
6521477 |
gacttggtaattcagttactgatgctttggctaatttaacattaaaagctttgtttaagcttccaggtccaaagccagataacacgaaatcattcaccgt |
6521378 |
T |
|
| Q |
317 |
tggtgatttgcatggatagcctgaaggggtgtctggattgttgagcaagtttgctacacagaaatcattggcagaagaagaaacatgtgaggtatatgat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
6521377 |
tggtgatttgcatggatagcctgaaggggtgtctggagttttgtgtaggtttgctacacagaaatcattggcagaagaagaaacatggaaggtgtatgat |
6521278 |
T |
|
| Q |
417 |
ga------gaggagaacaaaaaagaaaacaataatgtgattcatcttcatctttgaaaattgaatttgggttatgggaatgtgagaatggcttgtgctac |
510 |
Q |
| |
|
|| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| | |||| |||| | |
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|
| T |
6521277 |
gatgatatgaggagagcaaaaaagaaaataataatgtgattcatcttcatctttgaaaattgaatctgtgttatggaaatgtgagattagcttttgctgc |
6521178 |
T |
|
| Q |
511 |
ttatatagtgatatatattcttactagg--gcttatagtaggtgtaaaatattgtactagtaatttgatttgatttccttaaagcaatgtaaccttagta |
608 |
Q |
| |
|
||||||||| |||||||||| ||||| |||| |||||||||||| ||| |||||||||| |||||||| ||||||||||| || |||||||| || |
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|
| T |
6521177 |
ttatatagt--aatatattcttgctaggtagcttgtagtaggtgtaacatactgtactagtattttgatttcatttccttaaatcagcttaaccttaata |
6521080 |
T |
|
| Q |
609 |
attt---ttcttcattaatttttctctttccatggacacagcacacatacagaaaatctgtttagtttttgtttactattagaaaagggtaaattgtgtt |
705 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||| |||||| ||||| ||||||| |||||||| || |||||||| ||||||||||||| |
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|
| T |
6521079 |
atttttcttcttcattaattaatctctttccat-------acacgcatacaaaaaatttgtttagcttttgttttcttttagaaaaaggtaaattgtgtt |
6520987 |
T |
|
| Q |
706 |
gtacaatatatgac |
719 |
Q |
| |
|
|||||||||||||| |
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|
| T |
6520986 |
gtacaatatatgac |
6520973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 19144114 - 19144184
Alignment:
| Q |
92 |
aaatccagctgtaactttaccttgaaccatgattagtaattcagttgcatcgggatgagtatgcatcggaa |
162 |
Q |
| |
|
||||||||| |||| || ||||||||| | || | |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
19144114 |
aaatccagcagtaatttcaccttgaactactatcaataattcggttgcatcgggatgagtatgcattggaa |
19144184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 7318322 - 7318428
Alignment:
| Q |
93 |
aatccagctgtaactttaccttgaaccatgattagtaattcagttgcatcgggatgagtatgcatcggaacagatccatttacaccaatgtctactcttg |
192 |
Q |
| |
|
|||||| | |||| || |||||||| | ||||||||||||||||||||| |||||||| ||||| || ||| |||||||| |||||| |||| ||||| |
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|
| T |
7318322 |
aatccaacagtaatttgaccttgaataacgattagtaattcagttgcatcaggatgagtgtgcattggtacacttccatttataccaatatctattcttg |
7318421 |
T |
|
| Q |
193 |
ccgcaga |
199 |
Q |
| |
|
| ||||| |
|
|
| T |
7318422 |
ctgcaga |
7318428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 351
Target Start/End: Original strand, 7318561 - 7318592
Alignment:
| Q |
320 |
tgatttgcatggatagcctgaaggggtgtctg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7318561 |
tgatttgcatggatagcctgaaggggtgtctg |
7318592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 7321925 - 7321892
Alignment:
| Q |
277 |
ttccaggtacaaagccagagaacacaaaatcatc |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
7321925 |
ttccgggtacaaagccagagaacacaaaatcatc |
7321892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 2345522 - 2345571
Alignment:
| Q |
405 |
gaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcat |
454 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| ||||| |||| |
|
|
| T |
2345522 |
gaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcat |
2345571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 2345400 - 2345440
Alignment:
| Q |
277 |
ttccaggtacaaagccagagaacacaaaatcatccactgtt |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2345400 |
ttccaggtactaagccagagaacacaaaatcattcactgtt |
2345440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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