View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_10 (Length: 428)
Name: NF20090_low_10
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 7568647 - 7569074
Alignment:
| Q |
1 |
tgttggaggtgtaggaggtggtgggatttttgtccctatgcttgctttgatcattggctttgatcccaagtcttctacagccatttccaagtgtaannnn |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568647 |
tgttggaggtgtaggaggtggtggaatttttgtccctatgcttgctttgatcattggctttgatcccaagtcttctacagccatttccaagtgtaagtgt |
7568746 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnattagtatgcttttttatcgttaggaatatgaactcgatacttcagaatttacaacactcacaccgacactgctcatcaactaatt |
200 |
Q |
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| T |
7568747 |
gtgtgtgtgtgtgtattagtatgcttttttatcggtaggaatatgaactcgatactccagaatttacaacactcacaccgacactgctcatcagctaatt |
7568846 |
T |
|
| Q |
201 |
gcgctagaccttgctggtccggcttatattcttgattgataatcatatatatagtataacaataataattttggattcttgaatatatcatatctttgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568847 |
gcgctagaccttgctggtccggcttatattcttgattaataatcatatatatagtataacaataataattttggattcttgaatatatcatatctttgat |
7568946 |
T |
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| Q |
301 |
ttgataattgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatg |
400 |
Q |
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| T |
7568947 |
ttgataattgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatg |
7569046 |
T |
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| Q |
401 |
atttggctttgcttttccagcctatgct |
428 |
Q |
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| T |
7569047 |
atttggctttgcttttccagcctatgct |
7569074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 307 - 428
Target Start/End: Complemental strand, 33126392 - 33126271
Alignment:
| Q |
307 |
attgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatgatttgg |
406 |
Q |
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| T |
33126392 |
attgcaggtatgattacaggagcagctgggtcaactgtgtattacaatctgaggcttagacacccaacactagacatgccacttatagattatgatcttg |
33126293 |
T |
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| Q |
407 |
ctttgcttttccagcctatgct |
428 |
Q |
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| T |
33126292 |
ctttgctcttccagcctatgct |
33126271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 33126764 - 33126687
Alignment:
| Q |
5 |
ggaggtgtaggaggtggtgggatttttgtccctatgcttgctttgatcattggctttgatcccaagtcttctacagcc |
82 |
Q |
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| T |
33126764 |
ggaggggtaggaggtggaggaatttttatccctatgctcactttgatcattggttttgatccaaagtcttctacagcc |
33126687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 50748443 - 50748539
Alignment:
| Q |
311 |
caggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatgatttggc |
407 |
Q |
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|||||||||| ||||||||||| | |||||||| |||||||| | ||||| ||| | || ||| | ||||||||| |||| || ||||||||||| |
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| T |
50748443 |
caggtatgatcatgggtgcagctctgtcaactgtctactacaaccttaggctgagacatcctacattggacatgccaattattgactatgatttggc |
50748539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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