View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_11 (Length: 417)
Name: NF20090_low_11
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 20600077 - 20599690
Alignment:
| Q |
12 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaagaagacatgtcatcaataagatgagagctactgatagcca |
111 |
Q |
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| T |
20600077 |
tgagatgaaccattagtaagaatctcaggaagagtatacctcaaggatatcattgaagaagaagacatgtcatcaataagatgagagatactgatagcca |
20599978 |
T |
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| Q |
112 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
20599977 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaacgtcgtcgccaagtgc |
20599878 |
T |
|
| Q |
212 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagagatgaagagtagcgttatgtggggag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20599877 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagagatgaagagtagcgttatgtggggag |
20599778 |
T |
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| Q |
312 |
aagcaattgttggtagcaatatataaatatatagtactatgatacatggtgttattaatagagtagtgttttgtggggagaaactatt |
399 |
Q |
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| T |
20599777 |
aagcaattgttggtagcaatatataaatatatagtactatgatacatggtgttattaatagagtagtgttttgtggggagaaactatt |
20599690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 6133897 - 6133623
Alignment:
| Q |
12 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaagaagacatgtcatcaataagatgagagctactgatagcca |
111 |
Q |
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| T |
6133897 |
tgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcattgaagaagaagacatgtcatctataagatgagaggaactaatcttca |
6133798 |
T |
|
| Q |
112 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgc |
211 |
Q |
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||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
6133797 |
cacccgaaacgcgatccacacgaataaaccctgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgc |
6133698 |
T |
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| Q |
212 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagag |
286 |
Q |
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| T |
6133697 |
ttctctaagcacccttttcacaaaatcaggtgttgattccattctaatatgatgatcagttcatgaaggtaagag |
6133623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 6133491 - 6133439
Alignment:
| Q |
303 |
tgtggggagaagcaattgttgg-tagcaatatataaatatatagtactatgat |
354 |
Q |
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| T |
6133491 |
tgtggggagaagctattgttggttagcaatatataattatatatttctatgat |
6133439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 47944888 - 47945036
Alignment:
| Q |
66 |
gaagaagaagacatgtcatcaataagatgagagctactgatagccatacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaa |
165 |
Q |
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|||||||||||||| ||||||| ||||| ||||| ||| || |||||||| ||||| | ||||||||||||||||| ||||||||||||| |||||||| |
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| T |
47944888 |
gaagaagaagacatatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaa |
47944987 |
T |
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| Q |
166 |
cagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgcttc |
214 |
Q |
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| T |
47944988 |
ccgcaaacaccaacagcttcaaatcactaacatcatcaccaagcgcttc |
47945036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 47944801 - 47944862
Alignment:
| Q |
12 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaaga |
73 |
Q |
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|||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||| ||||| |
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| T |
47944801 |
tgagatgaaccattggtaagaatctcaggaagagtatacctcaaagatatcattgatgaaga |
47944862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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