View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_12 (Length: 417)
Name: NF20090_low_12
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 2095544 - 2095311
Alignment:
| Q |
18 |
cataaaaagtttgtcaaacaaaaattgaaaataaattatagaaactattttttgagagaaaattatagaaactatgtaagtgaaagaatgtgtatataat |
117 |
Q |
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| T |
2095544 |
cataaaaagtttgtcaaacaaaaattgaaaataaattatagaaactattttttgagagaaaattatagaaactatgtaagtgaaagaatgtgtatataat |
2095445 |
T |
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| Q |
118 |
atatactgaccgaatttgtgtatagtaagaggatgtgacaatcacatttaaacagttttatcaagatcgaacagcgttataaaaattgtgcaacttaaaa |
217 |
Q |
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| T |
2095444 |
atatacggatcgaatttgtgtatagtaagaggatgtgacaatcacatttgaacagtttcatcaagatcgaacaacgttatgaaaattgtgcaacttaaaa |
2095345 |
T |
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| Q |
218 |
atatgtataagcattttaggtaggacacatatca |
251 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
2095344 |
atatgtataaacattttaggtaggacacatatca |
2095311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 2095214 - 2095139
Alignment:
| Q |
342 |
atctctaccaaatatcatattcctctccttttaggcttcattagttttgtcatcaaaacaaactcaaagtttaccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |
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| T |
2095214 |
atctctaccaaatatcatattcctctccttttagtcttcattagttttgccatcaaagcaaactcaaagtttaccc |
2095139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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