View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_14 (Length: 407)
Name: NF20090_low_14
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 32909462 - 32909075
Alignment:
| Q |
1 |
aaacatagaacatgataaaaataatgtacaattaagttgctgggcatgtgacatgtgtgtgcccacttaaaccatatgaacaaacatacaacataacatt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |
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| T |
32909462 |
aaacataaaacatgataaaaataatgtacaattaagttgctgagcatgtgacatgtgtgtgcccacttaaactatatgaaaaaacatacaacat-----t |
32909368 |
T |
|
| Q |
101 |
tgtaggcaacaatgatccaacacacttgaagagtagccctacaaaataaacaagaaatgatgatttaacacttcctggttcaagtgaatcagcaatgcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32909367 |
tgtaggcaacaatgatccaacacacttgaagagtagccctacaaaataaacaagaaatgatgatttaacacttcctggttcaagtgaatcagcaatgcca |
32909268 |
T |
|
| Q |
201 |
ccaaacgtccaaattccaaactatatatgggacccttgtcaactgtgcagcatggcaaaccctagcaaattcccaacagaattatccacactatgtactg |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32909267 |
ccaaacgtccaaattccaaaccatatatgggacccttgtcaactgtgcagcatggcaaaccctagcaaattcccaacagaattatccacactatgtactg |
32909168 |
T |
|
| Q |
301 |
atgatattcatactgccacataaaacattccataccacacacatactatttaggataactcccccacatgggtgaaatcttttaagagataac |
393 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32909167 |
atgatattcatactgccacataaaacaatccataccacacacatactatttaggataactcccccacatgtgtgaaatcttttaagagataac |
32909075 |
T |
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