View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20090_low_15 (Length: 406)
Name: NF20090_low_15
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 14538966 - 14539339
Alignment:
| Q |
15 |
atcactttatatataaaaccaaccaatgaacattcataatcatacacacaaagtaacatttatacaagtgagtgagaatcttaccggtggtctactgtga |
114 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538966 |
atcactttatatataaaaccaatcaatgatcattcataatcatacacacaaagtaccatttatacaagtgagtgagaatcttaccggtggtctactgtga |
14539065 |
T |
|
| Q |
115 |
caaacagaatcatggtcgtctatggtggtggtcctggtgcactgcttctcagagctggtgttatccatagaagctattgaagttgaagtgaaaccagtca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539066 |
caaacagaatcatggtcgtctatggtggtggtcctggtgcactgcttctcagagctggtgttatccatagaagctattgaagttgaagtgaaaccagtca |
14539165 |
T |
|
| Q |
215 |
taccaaattccctatcgtacgtatcaagtgtcacttgttggctctgcctcccaaaggttgcactgccactcatactttggtccctaccgctccccgccac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539166 |
taccaaattccctatcgtacgtatcaagtgtcacttgctggctctgcctcccaaaggttgcactgccactcatactttggtccctaccgctccccgccac |
14539265 |
T |
|
| Q |
315 |
gtgtgccaccctcccatgctttgccgctgacgcagcaaggatacctccttcgtcctgcgttgcggccacgacag |
388 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14539266 |
gtgtgccaccctcccacgctttgccgctgacgcagcaaggatacctccttcgtcttgcgttgcggccacgacag |
14539339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University