View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20090_low_17 (Length: 397)
Name: NF20090_low_17
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 55172388 - 55172008
Alignment:
| Q |
1 |
tggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattaattatggtttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55172388 |
tggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattatttatggtttttct |
55172289 |
T |
|
| Q |
101 |
aatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcatttgttaatggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172288 |
aatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcatttgttaatggaca |
55172189 |
T |
|
| Q |
201 |
atacattggtaagaacataatttcaataataaacggcaatggtgagtgagaggagaggaaatggcaagagttttatatgattctaactttgatttgtaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172188 |
atacattggtaagaacataatttcaataataaacgacaatggtgagtgataggagaggaaatggcaagagttttatatgattctaactttgatttgtaat |
55172089 |
T |
|
| Q |
301 |
aggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172088 |
aggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacat |
55172008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University