View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_20 (Length: 364)

Name: NF20090_low_20
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_20
NF20090_low_20
[»] chr1 (28 HSPs)
chr1 (1-112)||(38211950-38212061)
chr1 (234-286)||(33616416-33616468)
chr1 (234-286)||(50593188-50593240)
chr1 (126-173)||(2657421-2657468)
chr1 (126-173)||(32448757-32448804)
chr1 (126-173)||(41467638-41467685)
chr1 (236-286)||(46602108-46602158)
chr1 (234-286)||(27055025-27055077)
chr1 (126-178)||(44293461-44293513)
chr1 (126-173)||(6626030-6626077)
chr1 (125-168)||(26472184-26472227)
chr1 (126-173)||(29770788-29770835)
chr1 (126-173)||(41895170-41895217)
chr1 (125-175)||(44544051-44544101)
chr1 (126-175)||(13312537-13312586)
chr1 (237-286)||(15551276-15551325)
chr1 (129-173)||(4953170-4953214)
chr1 (125-173)||(34752319-34752367)
chr1 (126-178)||(46967047-46967099)
chr1 (122-173)||(41999944-41999995)
chr1 (126-173)||(47317444-47317491)
chr1 (126-173)||(47671715-47671762)
chr1 (126-164)||(42234966-42235004)
chr1 (126-175)||(33073327-33073376)
chr1 (125-173)||(4068688-4068736)
chr1 (126-166)||(4243496-4243536)
chr1 (141-173)||(24215881-24215913)
chr1 (126-178)||(33187447-33187499)
[»] chr3 (25 HSPs)
chr3 (126-178)||(51224044-51224096)
chr3 (234-286)||(6177774-6177826)
chr3 (126-173)||(25641764-25641811)
chr3 (126-173)||(37028841-37028888)
chr3 (126-173)||(38156638-38156685)
chr3 (126-173)||(42589948-42589995)
chr3 (126-173)||(54707226-54707273)
chr3 (126-173)||(55000184-55000231)
chr3 (126-168)||(48534013-48534055)
chr3 (236-286)||(53668838-53668888)
chr3 (129-173)||(54401305-54401349)
chr3 (126-173)||(34279727-34279774)
chr3 (120-167)||(45059007-45059054)
chr3 (126-173)||(51416087-51416134)
chr3 (126-173)||(52756073-52756120)
chr3 (239-286)||(53685267-53685314)
chr3 (122-173)||(29625829-29625880)
chr3 (129-168)||(40688435-40688474)
chr3 (126-173)||(43612053-43612100)
chr3 (126-173)||(49130696-49130743)
chr3 (126-168)||(24688237-24688279)
chr3 (122-167)||(39141127-39141171)
chr3 (126-167)||(47510946-47510987)
chr3 (137-173)||(39053523-39053559)
chr3 (126-178)||(43021839-43021891)
[»] chr4 (25 HSPs)
chr4 (126-175)||(22620709-22620758)
chr4 (234-286)||(47281164-47281216)
chr4 (126-173)||(45633785-45633832)
chr4 (126-173)||(52688467-52688514)
chr4 (234-283)||(20378813-20378862)
chr4 (129-173)||(33289821-33289865)
chr4 (126-178)||(41632013-41632065)
chr4 (126-173)||(15060295-15060342)
chr4 (126-173)||(34552437-34552484)
chr4 (126-173)||(37239096-37239143)
chr4 (126-173)||(52461481-52461528)
chr4 (126-173)||(27873556-27873601)
chr4 (122-173)||(237606-237657)
chr4 (126-173)||(5117444-5117491)
chr4 (126-173)||(20351848-20351895)
chr4 (126-173)||(31914326-31914373)
chr4 (126-173)||(47662108-47662155)
chr4 (126-173)||(50536630-50536677)
chr4 (122-173)||(51981481-51981532)
chr4 (126-173)||(53461822-53461869)
chr4 (122-175)||(1932890-1932943)
chr4 (126-175)||(6020055-6020104)
chr4 (129-178)||(33557951-33558000)
chr4 (126-163)||(49014226-49014263)
chr4 (129-173)||(3291814-3291858)
[»] chr8 (16 HSPs)
chr8 (234-286)||(32328266-32328318)
chr8 (126-173)||(9509406-9509453)
chr8 (126-173)||(9713804-9713851)
chr8 (122-173)||(41843371-41843422)
chr8 (234-286)||(10162209-10162261)
chr8 (126-178)||(40458778-40458830)
chr8 (125-173)||(40649836-40649884)
chr8 (126-173)||(2379258-2379305)
chr8 (126-164)||(31940441-31940479)
chr8 (126-175)||(37301331-37301380)
chr8 (126-178)||(41654019-41654071)
chr8 (126-173)||(4975413-4975460)
chr8 (126-173)||(24079907-24079954)
chr8 (126-173)||(45236571-45236618)
chr8 (126-164)||(41425435-41425473)
chr8 (126-175)||(4447301-4447350)
[»] chr5 (22 HSPs)
chr5 (126-178)||(6973176-6973228)
chr5 (234-286)||(17086932-17086984)
chr5 (234-286)||(17087581-17087633)
chr5 (126-173)||(9374508-9374555)
chr5 (126-173)||(19295848-19295895)
chr5 (126-173)||(38015520-38015567)
chr5 (234-286)||(3517646-3517698)
chr5 (234-286)||(3518017-3518069)
chr5 (129-173)||(42658671-42658715)
chr5 (126-173)||(3466687-3466734)
chr5 (126-173)||(3656574-3656621)
chr5 (126-173)||(5497391-5497438)
chr5 (126-173)||(9424598-9424645)
chr5 (126-173)||(13957788-13957835)
chr5 (126-173)||(27503497-27503544)
chr5 (126-167)||(42247797-42247838)
chr5 (126-161)||(14972108-14972143)
chr5 (126-173)||(23195254-23195301)
chr5 (126-173)||(38492731-38492777)
chr5 (126-173)||(43262189-43262236)
chr5 (137-178)||(763847-763888)
chr5 (126-167)||(27501061-27501102)
[»] chr2 (24 HSPs)
chr2 (234-286)||(3402372-3402424)
chr2 (234-286)||(3402905-3402957)
chr2 (126-173)||(3711750-3711797)
chr2 (126-173)||(19428432-19428479)
chr2 (126-173)||(35158056-35158103)
chr2 (120-173)||(145399-145452)
chr2 (126-173)||(13543630-13543677)
chr2 (126-173)||(28641298-28641345)
chr2 (126-164)||(43898977-43899015)
chr2 (129-178)||(27331414-27331463)
chr2 (126-163)||(29687168-29687205)
chr2 (126-163)||(34249392-34249429)
chr2 (126-173)||(2688735-2688782)
chr2 (126-173)||(3266404-3266451)
chr2 (126-173)||(4258606-4258653)
chr2 (126-173)||(26710473-26710520)
chr2 (126-173)||(27400531-27400578)
chr2 (126-173)||(28566704-28566751)
chr2 (122-173)||(33427649-33427700)
chr2 (126-173)||(40635346-40635393)
chr2 (124-178)||(6430596-6430650)
chr2 (126-163)||(12730188-12730225)
chr2 (126-170)||(2000345-2000388)
chr2 (126-166)||(11159756-11159796)
[»] scaffold0339 (1 HSPs)
scaffold0339 (234-285)||(12945-12996)
[»] chr7 (22 HSPs)
chr7 (126-173)||(35752040-35752087)
chr7 (121-168)||(39453483-39453530)
chr7 (126-178)||(36816851-36816903)
chr7 (126-173)||(7876334-7876381)
chr7 (126-173)||(26371168-26371215)
chr7 (126-173)||(37128056-37128103)
chr7 (126-173)||(43489337-43489384)
chr7 (126-173)||(45237539-45237586)
chr7 (126-173)||(46817427-46817474)
chr7 (122-173)||(48085977-48086028)
chr7 (126-168)||(44659967-44660009)
chr7 (126-175)||(22979653-22979702)
chr7 (126-173)||(5712298-5712345)
chr7 (126-173)||(24923030-24923077)
chr7 (128-167)||(25037516-25037555)
chr7 (126-173)||(35328075-35328122)
chr7 (126-173)||(37443608-37443655)
chr7 (126-173)||(47066983-47067030)
chr7 (126-164)||(39323735-39323773)
chr7 (126-178)||(498194-498246)
chr7 (129-173)||(24228660-24228704)
chr7 (129-173)||(26941541-26941585)
[»] chr6 (11 HSPs)
chr6 (126-173)||(4487645-4487692)
chr6 (126-173)||(15965551-15965598)
chr6 (126-173)||(28948851-28948898)
chr6 (127-173)||(13329499-13329545)
chr6 (126-173)||(3786867-3786914)
chr6 (126-178)||(18661847-18661899)
chr6 (126-173)||(959910-959957)
chr6 (126-173)||(18101501-18101548)
chr6 (126-173)||(19281061-19281108)
chr6 (126-178)||(1398666-1398718)
chr6 (126-178)||(24913102-24913154)
[»] scaffold0108 (2 HSPs)
scaffold0108 (236-286)||(18554-18604)
scaffold0108 (234-286)||(18007-18059)
[»] scaffold0721 (1 HSPs)
scaffold0721 (126-173)||(7209-7256)
[»] scaffold0155 (1 HSPs)
scaffold0155 (122-173)||(2434-2485)
[»] scaffold0092 (1 HSPs)
scaffold0092 (126-173)||(39562-39609)
[»] scaffold0007 (1 HSPs)
scaffold0007 (126-173)||(176783-176830)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38211950 - 38212061
Alignment:
Q  1 tttcttattactaaggtgatgatggacttttcattttatatgtttaagttcaataagatatgggacgaggaagttagaagttcactctttgtcggttaat 100  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  38211950 tttcctattattaaggtgatgatggacttttcattttatatgtttaagttgaatgagatatgggacgaggaaggtagaagttcactctttgttggttaat 38212049  T
Q  101 caatagatttta 112  Q
    ||||||| ||||    
T  38212050 caatagaattta 38212061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 33616468 - 33616416
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  33616468 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 33616416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 50593240 - 50593188
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  50593240 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 50593188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 2657468 - 2657421
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2657468 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 2657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 32448804 - 32448757
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  32448804 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 32448757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 41467638 - 41467685
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41467638 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 41467685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 46602158 - 46602108
Alignment:
Q  236 gtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  46602158 gtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 46602108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 27055025 - 27055077
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  27055025 tcgtcggatattttatcaaaatatatttcgtctgagatcctaaattatccaat 27055077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 44293461 - 44293513
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||||||||| |||| ||||||||||| ||||||||||||||| |||||||||    
T  44293461 aactaggctatccatgaaagaatgatgagtaatttaccccaactaatatatat 44293513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 6626030 - 6626077
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  6626030 aactaggctacccatgaaagaatgatggataatttaccccaaccaata 6626077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 26472184 - 26472227
Alignment:
Q  125 taactaggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  26472184 taactaggctacccatgaaagaatgatgagtaatttaccccaac 26472227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 29770835 - 29770788
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  29770835 aactaggctacccatgaaaaaatgatgggtaatttaccccaaccaata 29770788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 41895170 - 41895217
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  41895170 aactaggctacccatgaaagaatgatgggtaatttacaccaaccaata 41895217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 44544051 - 44544101
Alignment:
Q  125 taactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    |||||||||||||||| |||||||||||| |||||||||| ||| ||||||    
T  44544051 taactaggctacccatgaaagaatgatggataatttaccctaactaatata 44544101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 13312537 - 13312586
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||||    
T  13312537 aactagggtacccatagaagaatggtgggtaatttaccccaaccaatata 13312586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 15551276 - 15551325
Alignment:
Q  237 tcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||||||||||    
T  15551276 tcggatattttatcaaaatatatttcgtcggatatcctaaattatccaat 15551325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 4953214 - 4953170
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||    
T  4953214 taggctatccatgaaagaatgatgggtaatttaccccaaccaata 4953170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 34752319 - 34752367
Alignment:
Q  125 taactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||| ||||    
T  34752319 taactaggttacccatgaaagaatgatgggtaatttactccaaccaata 34752367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 46967047 - 46967099
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||| ||||||| |||||||||||||||||||| || |||||||| ||||    
T  46967047 aactagggtacccatgaaagaatgatgggtaatttatcctaacaaatacatat 46967099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 41999995 - 41999944
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||    
T  41999995 tgataactagggtacccatggaagaatggtgggtaatttaccccaaccaata 41999944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 47317491 - 47317444
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||| |||||||||| ||||||||||||||| ||||    
T  47317491 aactagggtacccatagaagaatgatgagtaatttaccccaaccaata 47317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 47671762 - 47671715
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  47671762 aactagggtacccatggaagaatgatgggtaatttaccccaaccaata 47671715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 42235004 - 42234966
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccc 164  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  42235004 aactaggctacccatgaaagaatgatggataatttaccc 42234966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 33073376 - 33073327
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  33073376 aactagggtacccatggaagaatggtgggtaatttaccccaaccaatata 33073327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 4068688 - 4068736
Alignment:
Q  125 taactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||| |||||||  ||||||| |||||||||||||||||| ||||    
T  4068688 taactagggtacccatggaagaatggtgggtaatttaccccaaccaata 4068736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 4243496 - 4243536
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacccca 166  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  4243496 aactagactacccatgaaagaattatgggtaatttacccca 4243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 24215913 - 24215881
Alignment:
Q  141 aaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||||||||||||||||||| ||||    
T  24215913 aaaagaatgatgggtaatttaccccaaccaata 24215881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 33187499 - 33187447
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||| |||||||  ||||||| |||||||||||||||||| |||| ||||    
T  33187499 aactagggtacccatggaagaatggtgggtaatttaccccaaccaatacatat 33187447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 51224044 - 51224096
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51224044 aactaggctacccataaaagaatgatgggtaatttaccccaaccaatatatat 51224096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 6177774 - 6177826
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  6177774 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 6177826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 25641811 - 25641764
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  25641811 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 25641764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 37028888 - 37028841
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  37028888 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 37028841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 38156638 - 38156685
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38156638 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 38156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 42589995 - 42589948
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  42589995 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 42589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 54707226 - 54707273
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  54707226 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 54707273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 55000184 - 55000231
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  55000184 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 55000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 48534013 - 48534055
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  48534013 aactaggctacccatgaaagaatgatgggtaatttaccccaac 48534055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 53668838 - 53668888
Alignment:
Q  236 gtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  53668838 gtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 53668888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 54401349 - 54401305
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  54401349 taggctacccatgaaagaatgatgggtaatttaccccaaccaata 54401305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 34279727 - 34279774
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  34279727 aactaggctatccatgaaagaatgatgggtaatttaccccaaccaata 34279774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 45059054 - 45059007
Alignment:
Q  120 gttgataactaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  45059054 gttgacaactaggctgcccatgaaagaatgatgggtaatttaccccaa 45059007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 51416134 - 51416087
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  51416134 aactaggctacccatgaaagaatgatgagtaatttaccccaaccaata 51416087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 52756073 - 52756120
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  52756073 aactaggctacccatgaaagaatgatgggtaatttacccaaaccaata 52756120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 53685267 - 53685314
Alignment:
Q  239 ggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  53685267 ggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 53685314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 29625829 - 29625880
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||| |||| |||||||| ||||||| |||||||||||||||||| ||||    
T  29625829 tgataattagggtacccatagaagaatggtgggtaatttaccccaaccaata 29625880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 40688474 - 40688435
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  40688474 taggctacccatgaaagaatgatggataatttaccccaac 40688435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 43612053 - 43612100
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  43612053 aactagggtacccatggaagaatgatgggtaatttaccccaaccaata 43612100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 49130743 - 49130696
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  49130743 aactagggtacccatagaagaatggtgggtaatttaccccaaccaata 49130696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 24688279 - 24688237
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||    
T  24688279 aactaggttacccatgaaagaatgatggataatttaccccaac 24688237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 39141127 - 39141171
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||    
T  39141127 tgataactaggttacc-atgaaagaatgatgggtaatttaccccaa 39141171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 47510946 - 47510987
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||    
T  47510946 aactaggctacccatgaaagaatgatgagtaatttactccaa 47510987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 39053559 - 39053523
Alignment:
Q  137 ccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  39053559 ccataaaaaaatgatgggtaatttaccccaacgaata 39053523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 43021891 - 43021839
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||| |||| || |||||||| |||||||||||||||||| |||| ||||    
T  43021891 aactagggtacctatgaaagaatggtgggtaatttaccccaaccaatacatat 43021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 22620758 - 22620709
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22620758 aactaggctacccataaaagaatgatgggtaatttaccccaaccaatata 22620709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 47281164 - 47281216
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  47281164 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 47281216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 45633785 - 45633832
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  45633785 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 45633832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 52688514 - 52688467
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  52688514 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 52688467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 20378813 - 20378862
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatcc 283  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  20378813 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatcc 20378862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 33289865 - 33289821
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  33289865 taggctacccatgaaagaatgatgggtaatttaccccaaccaata 33289821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 41632013 - 41632065
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||    
T  41632013 aactaggatacccatgaaagaatgatgggtaatttaccccaaccaatacatat 41632065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 15060295 - 15060342
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  15060295 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 15060342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 34552484 - 34552437
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  34552484 aactaggctacccatgaaagaatgatgggtaatttactccaaccaata 34552437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 37239096 - 37239143
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  37239096 aactaggctacccatgaaagaatgatggataatttaccccaaccaata 37239143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 52461528 - 52461481
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  52461528 aactaggctatccatgaaagaatgatgggtaatttaccccaaccaata 52461481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 27873556 - 27873601
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  27873556 aactaggctaccca--aaagaatgatgggtaatttaccccaaccaata 27873601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 237657 - 237606
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||    
T  237657 tgataactagggtacccatggaagaatggtgggtaatttaccccaaccaata 237606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 5117444 - 5117491
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  5117444 aactagactatccattaaagaatgatgggtaatttaccccaaccaata 5117491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 20351848 - 20351895
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  20351848 aactagactacccatgaaagaatgatgggtaatttatcccaaccaata 20351895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 31914373 - 31914326
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  31914373 aactagggtacccatggaagaatgatgggtaatttaccccaaccaata 31914326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 47662108 - 47662155
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  47662108 aactagggtacccatagaagaatggtgggtaatttaccccaaccaata 47662155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 50536630 - 50536677
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  50536630 aactagggtacccatagaagaatggtgggtaatttaccccaactaata 50536677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 51981481 - 51981532
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||| ||||    
T  51981481 tgataactagtctaccaatgaaagaatgatgagtaatttaccccaaccaata 51981532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 53461822 - 53461869
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  53461822 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 53461869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 1932943 - 1932890
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||||||| ||||||| ||| |||||||| ||||||| |||||| ||||||    
T  1932943 tgataactagggtacccatgaaaaaatgatggataatttatcccaaccaatata 1932890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 6020104 - 6020055
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  6020104 aactagggtacccatggaagaatggtgggtaatttaccccaaccaatata 6020055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 33557951 - 33558000
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||| ||||    
T  33557951 taggctattcatgaaagaatgatgggtaatttaccccaaccaatacatat 33558000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 49014263 - 49014226
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacc 163  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  49014263 aactaggctacccatgaaagaatgatgagtaatttacc 49014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 3291814 - 3291858
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  3291814 taggctatccatgaaagaatgatgagtaatttaccccaaccaata 3291858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 32328266 - 32328318
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  32328266 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 32328318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 9509406 - 9509453
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9509406 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 9509453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 9713851 - 9713804
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9713851 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 9713804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 41843422 - 41843371
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  41843422 tgataactaagctacccatgaaagaatgatgggtaatttaccccaaccaata 41843371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 10162209 - 10162261
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    |||| |||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  10162209 tcgttggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 10162261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 40458778 - 40458830
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||| ||||    
T  40458778 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaatacatat 40458830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 40649836 - 40649884
Alignment:
Q  125 taactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  40649836 taactaggctacccatgaaagaatgatgggtagtttaccccaaccaata 40649884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 2379305 - 2379258
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  2379305 aactaggctatccatgaaagaatgatgggtaatttaccccaaccaata 2379258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 31940479 - 31940441
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccc 164  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  31940479 aactaggctacccatgaaagaatgatgggtaatttaccc 31940441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 37301331 - 37301380
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||||    
T  37301331 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaatata 37301380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 41654071 - 41654019
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| |||| ||||    
T  41654071 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaatacatat 41654019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 4975413 - 4975460
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||| |||||||||| ||| ||||    
T  4975413 aactaggctacccatgaaagaatgatggataatttacccaaaccaata 4975460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 24079907 - 24079954
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  24079907 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 24079954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 45236571 - 45236618
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||||||||||| ||| |||||||||||||| ||||    
T  45236571 aactaggatacccataaaagaatggtggataatttaccccaaccaata 45236618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 41425435 - 41425473
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccc 164  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  41425435 aactaggctacccataaaagaattatggataatttaccc 41425473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 4447301 - 4447350
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  4447301 aactagggtacccatggaagaatggtgggtaatttaccccaaccaatata 4447350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 6973228 - 6973176
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  6973228 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaatacatat 6973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 17086984 - 17086932
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  17086984 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 17086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 17087581 - 17087633
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  17087581 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 17087633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 9374508 - 9374555
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9374508 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 9374555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 19295895 - 19295848
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  19295895 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 19295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 38015520 - 38015567
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38015520 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 38015567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 3517698 - 3517646
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||    
T  3517698 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatacaat 3517646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 3518017 - 3518069
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  3518017 tcgtcggatattttatcaaaatatatttcgtctgagatcctaaattatccaat 3518069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 42658671 - 42658715
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  42658671 taggctacccatgaaagaatgatgggtaatttaccccaaccaata 42658715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 3466687 - 3466734
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  3466687 aactagggtacccataaaagaatggtgggtaatttaccccaaccaata 3466734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 3656574 - 3656621
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  3656574 aactaggctacccatgaaagaatgatgagtaatttaccccaaccaata 3656621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 5497438 - 5497391
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  5497438 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 5497391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 9424598 - 9424645
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  9424598 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 9424645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 13957835 - 13957788
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  13957835 aactaggctacccatgaaagaatgatgggtaatttacctcaaccaata 13957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 27503544 - 27503497
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  27503544 aactaggctacccatgaaagaatgatgagtaatttaccccaaccaata 27503497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 42247797 - 42247838
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  42247797 aactaggctatccatgaaagaatgatgggtaatttaccccaa 42247838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 14972143 - 14972108
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaattta 161  Q
    ||||||||||||||| ||||||||||||||||||||    
T  14972143 aactaggctacccatgaaagaatgatgggtaattta 14972108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 23195254 - 23195301
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  23195254 aactaggctacccatgaaagaatgacgggtaatttactccaaccaata 23195301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 38492777 - 38492731
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| || ||||||||||||||||||||||||||| ||||    
T  38492777 aactaggctacc-atgaaagaatgatgggtaatttaccccaaccaata 38492731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 43262189 - 43262236
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  43262189 aactagggtacccatggaagaatgatgggtaatttaccccaaccaata 43262236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 763888 - 763847
Alignment:
Q  137 ccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||| ||||||||||||||||||||||||||| |||| ||||    
T  763888 ccatcaaagaatgatgggtaatttaccccaactaatacatat 763847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 27501061 - 27501102
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  27501061 aactagggtacccatggaagaatgatgggtaatttaccccaa 27501102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 3402424 - 3402372
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  3402424 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 3402372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 3402905 - 3402957
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  3402905 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 3402957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 3711797 - 3711750
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  3711797 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 3711750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 19428432 - 19428479
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  19428432 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 19428479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 35158056 - 35158103
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35158056 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 35158103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 145452 - 145399
Alignment:
Q  120 gttgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  145452 gttgacaactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 145399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 13543630 - 13543677
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  13543630 aactaggctacccatgaaagaatgatgggtaatttaccctaaccaata 13543677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 28641298 - 28641345
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  28641298 aactaggctacccatgaaagaataatgggtaatttaccccaaccaata 28641345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 43898977 - 43899015
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccc 164  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  43898977 aactaggctacccatgaaagaatgatgggtaatttaccc 43899015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 27331463 - 27331414
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||||||||||| |||||||||||| |||||||||||||| |||| ||||    
T  27331463 taggctacccatgaaagaatgatggataatttaccccaactaatacatat 27331414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 29687205 - 29687168
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacc 163  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  29687205 aactaggctacccatgaaagaatgatgggtaatttacc 29687168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 34249429 - 34249392
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacc 163  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34249429 aactaggctacccatgaaagaatgatgggtaatttacc 34249392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 2688735 - 2688782
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  2688735 aactaggctatccatgaaagaatgatgagtaatttaccccaaccaata 2688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 3266451 - 3266404
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  3266451 aactaggttacccatgaaagaatgatgggtaatttacctcaaccaata 3266404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 4258653 - 4258606
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| || ||||||||||||||||| |||||| ||||    
T  4258653 aactaggctacccatgaacgaatgatgggtaatttatcccaaccaata 4258606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 26710520 - 26710473
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  26710520 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 26710473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 27400578 - 27400531
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  27400578 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 27400531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 28566704 - 28566751
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  28566704 aactaggctacccatgaaagaatgatgagtaatttacctcaaccaata 28566751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 33427649 - 33427700
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||||| ||||    
T  33427649 tgataactagggtacccatgaaagaatggtgtgtaatttaccccaaccaata 33427700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 40635393 - 40635346
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  40635393 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 40635346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 6430650 - 6430596
Alignment:
Q  124 ataactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||| |||||||  ||||||| |||||||||||||||||| |||| ||||    
T  6430650 ataactagggtacccatggaagaatggtgggtaatttaccccaaccaatacatat 6430596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 12730225 - 12730188
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacc 163  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  12730225 aactaggctatccatgaaagaatgatgggtaatttacc 12730188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 2000345 - 2000388
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaa 170  Q
    |||||||||||| || ||||||||||| |||||||||||||||||    
T  2000345 aactaggctacc-atgaaagaatgatgagtaatttaccccaacaa 2000388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 11159796 - 11159756
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttacccca 166  Q
    ||||||| |||||||| ||||||| ||||||||||||||||    
T  11159796 aactagggtacccatagaagaatggtgggtaatttacccca 11159756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 12945 - 12996
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaa 285  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  12945 tcgtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaa 12996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 35752040 - 35752087
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35752040 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 35752087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 39453483 - 39453530
Alignment:
Q  121 ttgataactaggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39453483 ttgacaactaggctacccatgaaagaatgatgggtaatttaccccaac 39453530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 36816851 - 36816903
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||| ||||    
T  36816851 aactaggctacccatgaaagaatgatggataatttaccccaaccaatacatat 36816903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 7876334 - 7876381
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| || ||||||||||||||||||||||||||| ||||    
T  7876334 aactaggctaccaatgaaagaatgatgggtaatttaccccaaccaata 7876381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 26371215 - 26371168
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  26371215 aactaggctacccatgaaagaatgatgagtaatttaccccaaccaata 26371168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 37128103 - 37128056
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  37128103 aactaggctacccatgaaagaatgatggataatttaccccaaccaata 37128056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 43489384 - 43489337
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  43489384 aactagactacccatgaaagaatgatgggtaatttaccccaaccaata 43489337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 45237539 - 45237586
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  45237539 aactaagctacccataaaagaatgatgagtaatttaccccaaccaata 45237586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 46817427 - 46817474
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  46817427 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 46817474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 48086028 - 48085977
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||| ||||    
T  48086028 tgataattaggctacccatgaaagaatgatggataatttaccccaaccaata 48085977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 44660009 - 44659967
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaac 168  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  44660009 aactaggctacccataaaagaatgatggataatttactccaac 44659967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22979653 - 22979702
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatata 175  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||||    
T  22979653 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaatata 22979702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 5712345 - 5712298
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  5712345 aactagggtacccatgaaaaaatgatgggtaatttaccccaaccaata 5712298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 24923030 - 24923077
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  24923030 aactaggctacccatgaaagaaggatgggtaatttacctcaaccaata 24923077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 25037516 - 25037555
Alignment:
Q  128 ctaggctacccataaaagaatgatgggtaatttaccccaa 167  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  25037516 ctaggctacccatgaaagaatgatgagtaatttaccccaa 25037555  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 35328075 - 35328122
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  35328075 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 35328122  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 37443608 - 37443655
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| ||||    
T  37443608 aactagggtacccataaaaaaatggtgggtaatttaccccaaccaata 37443655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 47066983 - 47067030
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  47066983 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 47067030  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 39323773 - 39323735
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccc 164  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  39323773 aactaggctactcatgaaagaatgatgggtaatttaccc 39323735  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 498194 - 498246
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||||||||| |||| |||||||||||| ||||||| |||||| |||| ||||    
T  498194 aactaggctagccatgaaagaatgatggataatttatcccaaccaatacatat 498246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 24228704 - 24228660
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| |||||||||||| |||||||||| ||| ||||    
T  24228704 taggctacccatgaaagaatgatggataatttacccaaaccaata 24228660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 26941541 - 26941585
Alignment:
Q  129 taggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  26941541 taggctacccatgaaagaatgatgagtaatttaccctaaccaata 26941585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 4487692 - 4487645
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  4487692 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 4487645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 15965598 - 15965551
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15965598 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 15965551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 28948851 - 28948898
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  28948851 aactaggctacccatgaaagaatgatgggtaatttaccccaaccaata 28948898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 13329545 - 13329499
Alignment:
Q  127 actaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  13329545 actaggctacccatgaaagaatgatgggtaatttaccccaaccaata 13329499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 3786914 - 3786867
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  3786914 aactaggctacccatgaaagaatgatggataatttaccccaactaata 3786867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 18661899 - 18661847
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||||||||||||| |||||||||||| ||||||| |||||| |||| ||||    
T  18661899 aactaggctacccatgaaagaatgatggataatttatcccaaccaatacatat 18661847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 959910 - 959957
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  959910 aactagggtacccatgaaagaatggtgggtaatttaccccaaccaata 959957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 18101501 - 18101548
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  18101501 aactaggatacccatggaagaatgatgggtaatttaccccaaccaata 18101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 19281061 - 19281108
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    |||||||||||| || |||||||| |||||||||||||||||| ||||    
T  19281061 aactaggctacctatgaaagaatggtgggtaatttaccccaaccaata 19281108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 1398718 - 1398666
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    |||||||||||| || ||||||||| ||||||||||| ||||| |||| ||||    
T  1398718 aactaggctacctatgaaagaatgacgggtaatttactccaaccaatacatat 1398666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 24913102 - 24913154
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaatatatat 178  Q
    ||||| ||||| ||| ||||||||||| ||||||||||||||| |||| ||||    
T  24913102 aactaagctactcatgaaagaatgatgagtaatttaccccaaccaatacatat 24913154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 18554 - 18604
Alignment:
Q  236 gtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  18554 gtcggatattttatcaaaatatatttcgtcggagatcctaaattatccaat 18604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 18059 - 18007
Alignment:
Q  234 tcgtcggatgttttatcaaaatatatttcatcggagatcttaaattatccaat 286  Q
    |||||||||  |||||||||||||||||| ||||||||| |||||||||||||    
T  18059 tcgtcggataatttatcaaaatatatttcgtcggagatcctaaattatccaat 18007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 7256 - 7209
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  7256 aactaggctacccatgaaagaatgatgggtaatttatcccaaccaata 7209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 2434 - 2485
Alignment:
Q  122 tgataactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||| ||||    
T  2434 tgataactagggtacccatggaagaatgatgagtaatttaccccaaccaata 2485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 39562 - 39609
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  39562 aactagggtacccatggaagaatgatgggtaatttaccccaaccaata 39609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 176830 - 176783
Alignment:
Q  126 aactaggctacccataaaagaatgatgggtaatttaccccaacaaata 173  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  176830 aactaggatacccatagaagaatggtgggtaatttaccccaaccaata 176783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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