View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_25 (Length: 345)

Name: NF20090_low_25
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_25
NF20090_low_25
[»] chr1 (5 HSPs)
chr1 (138-324)||(48593751-48593937)
chr1 (138-324)||(48598362-48598548)
chr1 (81-121)||(48593931-48593971)
chr1 (81-121)||(48598542-48598582)
chr1 (10-38)||(49946712-49946740)
[»] chr7 (1 HSPs)
chr7 (10-45)||(30891119-30891154)
[»] chr4 (1 HSPs)
chr4 (10-38)||(45741982-45742010)
[»] chr3 (1 HSPs)
chr3 (10-38)||(24560309-24560337)
[»] chr2 (2 HSPs)
chr2 (10-38)||(20545801-20545829)
chr2 (10-38)||(29525857-29525885)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 138 - 324
Target Start/End: Complemental strand, 48593937 - 48593751
Alignment:
Q  138 aactattcaacccgtcccaatcccagtgcaattgtttgttcaatctctaaattgcattatacaaacacagatgaaatgctaaaggaattaaaatacactt 237  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593937 aactcttcaacccgtcccaatcccaatgcaaatgtttgttcaatctctaaattgcattatacaaacacagatgaaatgctaaaggaattaaaatacactt 48593838  T
Q  238 tcatatatccagtgtggtataagaagagtatatggaaatgagatagaaagccagaaaagatagataaaaggagatttaggtgtgtga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48593837 tcatatatccagtgtggtataagaagagtatatggaaatgagatagaaagccaaaaaagatagataaaaggagatttaggtgtgtga 48593751  T

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Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 138 - 324
Target Start/End: Complemental strand, 48598548 - 48598362
Alignment:
Q  138 aactattcaacccgtcccaatcccagtgcaattgtttgttcaatctctaaattgcattatacaaacacagatgaaatgctaaaggaattaaaatacactt 237  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48598548 aactcttcaacccgtcccaatcccaatgcaaatgtttgttcaatctctaaattgcattatacaaacacagatgaaatgctaaaggaattaaaatacactt 48598449  T
Q  238 tcatatatccagtgtggtataagaagagtatatggaaatgagatagaaagccagaaaagatagataaaaggagatttaggtgtgtga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48598448 tcatatatccagtgtggtataagaagagtatatggaaatgagatagaaagccaaaaaagatagataaaaggagatttaggtgtgtga 48598362  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 48593971 - 48593931
Alignment:
Q  81 tgaactctaccttcttaaactctctatccaaataaactctt 121  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  48593971 tgaactctaccttcttaaactctctatccaaacaaactctt 48593931  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 48598582 - 48598542
Alignment:
Q  81 tgaactctaccttcttaaactctctatccaaataaactctt 121  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  48598582 tgaactctaccttcttaaactctctatccaaacaaactctt 48598542  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 49946712 - 49946740
Alignment:
Q  10 ataatacttcaatcacatttaatttattt 38  Q
    |||||||||||||||||||||||||||||    
T  49946712 ataatacttcaatcacatttaatttattt 49946740  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 30891119 - 30891154
Alignment:
Q  10 ataatacttcaatcacatttaatttatttataaaaa 45  Q
    |||||||||||||||||||||||||||||| |||||    
T  30891119 ataatacttcaatcacatttaatttatttaaaaaaa 30891154  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 45742010 - 45741982
Alignment:
Q  10 ataatacttcaatcacatttaatttattt 38  Q
    |||||||||||||||||||||||||||||    
T  45742010 ataatacttcaatcacatttaatttattt 45741982  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 24560337 - 24560309
Alignment:
Q  10 ataatacttcaatcacatttaatttattt 38  Q
    |||||||||||||||||||||||||||||    
T  24560337 ataatacttcaatcacatttaatttattt 24560309  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 20545829 - 20545801
Alignment:
Q  10 ataatacttcaatcacatttaatttattt 38  Q
    |||||||||||||||||||||||||||||    
T  20545829 ataatacttcaatcacatttaatttattt 20545801  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 29525857 - 29525885
Alignment:
Q  10 ataatacttcaatcacatttaatttattt 38  Q
    |||||||||||||||||||||||||||||    
T  29525857 ataatacttcaatcacatttaatttattt 29525885  T

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