View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20090_low_27 (Length: 341)

Name: NF20090_low_27
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20090_low_27
NF20090_low_27
[»] chr1 (2 HSPs)
chr1 (146-324)||(40299994-40300175)
chr1 (13-65)||(40299859-40299911)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 146 - 324
Target Start/End: Original strand, 40299994 - 40300175
Alignment:
Q  146 ttcaccttcatggcatattcttgagatgggaatccatgagaagccattacacaaagtttctgactcatcatcgnnnnnnnnnnnnnn---gttgagagag 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||    
T  40299994 ttcaccttcatggcatattcttgagatgggaatccatgagaagccattacacaaagtttctgactcatcatcgtttttttttttttttttgttgagagag 40300093  T
Q  243 aattttggttttataaaccaaaattcccctcctttagtggctctatcaaaaacacgagttatctttattgtttgaacttttt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40300094 aattttggttttataaaccaaaattcccctcctttagtggctctatcaaaaacacgagttatctttattgtttgaacttttt 40300175  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 40299859 - 40299911
Alignment:
Q  13 aatatctggttttggtgcgtaacaaggcaccaattgttgacaaccctatcatc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40299859 aatatctggttttggtgcgtaacaaggcaccaattgttgacaaccctatcatc 40299911  T

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