View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20090_low_3 (Length: 554)
Name: NF20090_low_3
Description: NF20090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20090_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 8843373 - 8843905
Alignment:
| Q |
1 |
taaaacaaacacaagaaatggtcaaaagctcaaaccatttcagtttcaaagtaggtc--aaaacaaatttaggtcggttggagttcgggagctcactagg |
98 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| || | |||||||||| |
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| T |
8843373 |
taaaacaaacacaataaatggtcaaaagctcaaac-atttcagtttcaaagtaggtcctaaaacaaatttagctcggttggagctcagtagctcactaga |
8843471 |
T |
|
| Q |
99 |
gtcagggtaaacttcaaaactcagagggcactgacaaaagtacttacatattatccacgaacaaaattttcacgctgataatgagaattgaacccagact |
198 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
8843472 |
gtcagggcaaacttcaaaactcagagggcactgacaaaagtacttacatattatccacgaataaaattttcacgctaataatgagaattgaacccagact |
8843571 |
T |
|
| Q |
199 |
ctggtggccttatgggtt---------ctccttaccaacaggaccaaactttgttacannnnnnnacatctttttacatcgattaaaacttcaatcgatg |
289 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8843572 |
ctggtggccttatgggttatgagtgaactccttaccaacaggaccg---ttttttaca----------tctttttacatcgattaaaacttcaatcgatg |
8843658 |
T |
|
| Q |
290 |
taaaaacttannnnnnnaaatattttcaaagaaatctcaatttcaaagatccattgagaaaaatcagtttctaaagaggataattgtgatggatatctat |
389 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843659 |
taaaaacttatttttttaaatattttcaaagaaatctcaatttcaaagatccattgagaaaaatcagtttctaaagaggataattgtgatggatatctat |
8843758 |
T |
|
| Q |
390 |
tgactttgtcatgaacaactatagagactcttacattttgaaatagcagtggctgattttgcatcaaatccaataatcaagattagcattggaacaaaga |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843759 |
tgactttgtcatgaacaactatagagactcttacattttgaaatagcagttgctgattttgcatcaaatccaataatcaagattagcattggaacaaaga |
8843858 |
T |
|
| Q |
490 |
tgccaccaccaccaactccacctacacttccaaatgaagctccaaag |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8843859 |
tgccaccaccaccaactccacctacacttccaaatgaagctccaaag |
8843905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 511
Target Start/End: Original strand, 26959380 - 26959471
Alignment:
| Q |
420 |
ttacattttgaaatagcagtggctgattttgcatcaaatccaataatcaagatta-gcattggaacaaagatgccaccaccaccaactccacc |
511 |
Q |
| |
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||||||||||||| ||||| || ||||| | |||||| |||| || ||||||| |||| |||||||| ||||||||||||||||| ||||| |
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| T |
26959380 |
ttacattttgaaagagcagcagcagatttggtatcaaaaccaagaag-aagattaagcataggaacaaaaatgccaccaccaccaacaccacc |
26959471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 526
Target Start/End: Original strand, 36476475 - 36476583
Alignment:
| Q |
418 |
tcttacattttgaaatagcagtggctgattttgcatcaaatccaataatcaagattagcattggaacaaagatgccaccaccaccaactccacctacact |
517 |
Q |
| |
|
||||||||||||| || || || |||||||||||||||||||||| ||| | | | ||||| || ||||| |||||||| || ||||| || |||||| | |
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| T |
36476475 |
tcttacattttgatattgccgttgctgattttgcatcaaatccaacaattagggtaagcatgggcacaaatatgccacccccgccaacacctcctacagt |
36476574 |
T |
|
| Q |
518 |
tccaaatga |
526 |
Q |
| |
|
|||||||| |
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|
| T |
36476575 |
gccaaatga |
36476583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 534
Target Start/End: Original strand, 36466184 - 36466297
Alignment:
| Q |
418 |
tcttacattttgaaatagcagtggctgattttgcatcaaatccaataatcaagattagcattggaacaaagatgccaccaccaccaactccacctacact |
517 |
Q |
| |
|
||||||||||||| || || || |||||||||||||| ||||||||||| | | | ||||| |||||| |||||||| |||||||| || || || | |
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| T |
36466184 |
tcttacattttgatattgctgttgctgattttgcatcgaatccaataataagggtaagcatgggaaca---atgccacccccaccaacacctcccaccgt |
36466280 |
T |
|
| Q |
518 |
tccaaatgaagctccaa |
534 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
36466281 |
cccaaatgaagatccaa |
36466297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 523
Target Start/End: Complemental strand, 50747537 - 50747432
Alignment:
| Q |
418 |
tcttacattttgaaatagcagtggctgattttgcatcaaatccaataatcaaga-ttagcattggaacaaagatgccaccaccaccaactccacctacac |
516 |
Q |
| |
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|||||||||| || |||||||| | |||||| | ||||||||||||||| |||| | ||||| ||||| || |||||||||||||| || || || |||| |
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| T |
50747537 |
tcttacatttggagatagcagtcgatgatttaggatcaaatccaataat-aagactgagcataggaacgaatatgccaccaccacctacacctccaacac |
50747439 |
T |
|
| Q |
517 |
ttccaaa |
523 |
Q |
| |
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||||||| |
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|
| T |
50747438 |
ttccaaa |
50747432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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